RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NR2C2APQ86WQ0 139 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 IL17BQ9UHF5 180 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 PATE4P0C8F1 98 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 RPL27AP46776 148 aaKnown RBP8.79□□□□□ -1
CCDC88A-202ENST00000336838 CA5BP1Q8WTZ4 195 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 WDYHV1Q96HA8 205 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 WNT5BQ9H1J7 359 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 CEP192Q8TEP8 1941 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 PSMB2P49721 201 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 SIGLEC14Q08ET2 396 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 WDR25Q64LD2 544 aaPredicted RBP8.79□□□□□ -1
CCDC88A-202ENST00000336838 CALYQ9NYX4 217 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 MAS1LP35410 378 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 DLX1P56177 255 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 PMS2CLQ68D20 193 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 WNT9BO14905 357 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 COX6A1P12074 109 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 TMEM177Q53S58 311 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 Q5BKY6 102 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 TMEM78Q5T7P6 136 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 HES3Q5TGS1 186 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 SFTPA1Q8IWL2 248 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 DPRXA6NFQ7 191 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 C5orf52A6NGY3 159 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 C1QCP02747 245 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 CKS2P33552 79 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 ZNF788Q6ZQV5 615 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 TCF23Q7RTU1 214 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 NEUROG1Q92886 237 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 MRPS16Q9Y3D3 137 aaKnown RBP8.79□□□□□ -1
CCDC88A-202ENST00000336838 SHISA3A0PJX4 238 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 AP5S1Q9NUS5 200 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 SNAI3Q3KNW1 292 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 BIVMQ86UB2 503 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 FADS6Q8N9I5 356 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 OR10S1Q8NGN2 331 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 OR52E5Q8NH55 327 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 Q6ZT83 130 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 RND1Q92730 232 aa8.79□□□□□ -1
CCDC88A-202ENST00000336838 PCNX2A6NKB5 2137 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 PPIAL4EA0A075B759 164 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TRBV23-1A0A0A0MS06 115 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TRGV8A0A0C4DH27 118 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 PPIAL4DF5H284 164 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 F5H697 171 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 NPIPB7O75200 414 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 PPIAL4FP0DN26 164 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 CEACAM1P13688 526 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 STARD6P59095 220 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 SLC25A28Q96A46 364 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 GPR82Q96P67 336 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 RARRES2Q99969 163 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 NDUFAF3Q9BU61 184 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TCF19Q9Y242 345 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 PPIAL4AQ9Y536 164 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 DNASE2O00115 360 aaPredicted RBP8.78□□□□□ -1
CCDC88A-202ENST00000336838 SLC25A17O43808 307 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 ACSF3Q4G176 576 aaPredicted RBP8.78□□□□□ -1
CCDC88A-202ENST00000336838 IGLV3-12A0A075B6K2 115 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TRAV14DV4A0A0A6YYC5 116 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TCF21O43680 179 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 MRPL13Q9BYD1 178 aaKnown RBP8.78□□□□□ -1
CCDC88A-202ENST00000336838 HES7Q9BYE0 225 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TNFRSF19Q9NS68 423 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 CLEC5AQ9NY25 188 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 NOTCH4Q99466 2003 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TRBV24-1A0A075B6N3 115 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 FAM106CPP0CH98 169 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 IL9P15248 144 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 GCHFRP30047 84 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 SFTPA2Q8IWL1 248 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 GNB1LQ9BYB4 327 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 ALKBH6Q3KRA9 238 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 ATP5L2Q7Z4Y8 100 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TMEM170AQ8WVE7 144 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 IDI2-AS1Q9NZ38 188 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 NDUFS6O75380 124 aaKnown RBP8.78□□□□□ -1
CCDC88A-202ENST00000336838 LY6G6FQ5SQ64 297 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 AMMECR1LQ6DCA0 310 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 TMEM136Q6ZRR5 245 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 HERPUD1Q15011 391 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 ZNF441Q8N8Z8 693 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 FAM222BQ8WU58 562 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 REPIN1Q9BWE0 567 aaKnown RBP8.78□□□□□ -1
CCDC88A-202ENST00000336838 RPRMQ9NS64 109 aa8.78□□□□□ -1
CCDC88A-202ENST00000336838 OR10J3Q5JRS4 329 aa8.77□□□□□ -1
CCDC88A-202ENST00000336838 DGAT2L7PQ6IED9 249 aa8.77□□□□□ -1
CCDC88A-202ENST00000336838 CIARTQ8N365 385 aaPredicted RBP8.77□□□□□ -1
CCDC88A-202ENST00000336838 ZNF703Q9H7S9 590 aaPredicted RBP8.77□□□□□ -1
CCDC88A-202ENST00000336838 CHCHD2Q9Y6H1 151 aaPredicted RBP8.77□□□□□ -1
CCDC88A-202ENST00000336838 ADAMTS9Q9P2N4 1935 aa8.77□□□□□ -1
CCDC88A-202ENST00000336838 SRIP30626 198 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 PLP1P60201 277 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 ZXDAP98168 799 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 SPANXN1Q5VSR9 72 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 PARD6GQ9BYG4 376 aaPredicted RBP8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 EML6Q6ZMW3 1958 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 LYL1P12980 280 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 GAS1P54826 345 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 C1orf185Q5T7R7 199 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms