RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 NDUFAF3Q9BU61 184 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF257Q9Y2Q1 563 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 TNFRSF18Q9Y5U5 241 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 AHCTF1Q8WYP5 2266 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 PSMB11A5LHX3 300 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 H3BUT2 72 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 TMEM187Q14656 261 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 C9orf40Q8IXQ3 194 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 DMRTA2Q96SC8 542 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 PSG4Q00888 419 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 FUT5Q11128 374 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 PKIBQ9C010 78 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 IDI2-AS1Q9NZ38 188 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 ATP5G2Q06055 141 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 SYNGR3O43761 229 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 CEACAM4O75871 244 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 FOXA3P55318 350 aaPredicted RBP11.9□□□□□ -0.5
CSPG4-201ENST00000308508 UNQ5815/PRO19632Q6UWF5 114 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 APOBEC4Q8WW27 367 aaKnown RBP11.9□□□□□ -0.5
CSPG4-201ENST00000308508 NHSQ6T4R5 1651 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 TRAV8-4A0A0B4J246 113 aa11.9□□□□□ -0.51
CSPG4-201ENST00000308508 SNAI2O43623 268 aa11.9□□□□□ -0.51
CSPG4-201ENST00000308508 C1QAP02745 245 aa11.9□□□□□ -0.51
CSPG4-201ENST00000308508 TPRX1Q8N7U7 411 aa11.9□□□□□ -0.51
CSPG4-201ENST00000308508 ST6GALNAC6Q969X2 333 aa11.9□□□□□ -0.51
CSPG4-201ENST00000308508 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.89□□□□□ -0.51
CSPG4-201ENST00000308508 ZAR1Q86SH2 424 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 CALYQ9NYX4 217 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 A8MXK9 166 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 NDUFA2O43678 99 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 PEX7O00628 323 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 LINC01565O15544 149 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 PTGDSP41222 190 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 ORMDL3Q8N138 153 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 LRTM2Q8N967 370 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 SLC25A38Q96DW6 304 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 ODAMA1E959 279 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 TMEM229AB2RXF0 380 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 NGFRP08138 427 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 TIMM23BQ5SRD1 257 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 TRBV5-7A0A0A0MS05 114 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 NDUFA3O95167 84 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 NPPCP23582 126 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF385AQ96PM9 386 aaKnown RBP11.89□□□□□ -0.51
CSPG4-201ENST00000308508 CELA2BP08218 269 aaPredicted RBP11.89□□□□□ -0.51
CSPG4-201ENST00000308508 TGIF1Q15583 401 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 EEF1AKMT3Q96AZ1 226 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 RCC1LQ96I51 464 aaKnown RBP11.89□□□□□ -0.51
CSPG4-201ENST00000308508 NPCDR1Q9BY65 106 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 NPFFR1Q9GZQ6 430 aa11.89□□□□□ -0.51
CSPG4-201ENST00000308508 FNDC4Q9H6D8 234 aaPredicted RBP11.89□□□□□ -0.51
CSPG4-201ENST00000308508 FOXI3A8MTJ6 420 aaPredicted RBP11.88□□□□□ -0.51
CSPG4-201ENST00000308508 DRD3P35462 400 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 PAX2Q02962 417 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 IGHV1OR15-9A0A0B4J2B8 117 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF721Q8TF20 911 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 TCF19Q9Y242 345 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 AKAP6Q13023 2319 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 NPIPB4C9JG80 1138 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 R3HDMLQ9H3Y0 253 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 JPT1Q9UK76 154 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 WDR82Q6UXN9 313 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 TUBA4BQ9H853 241 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 RIPPLY3P57055 190 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 DNM1P46Q6ZS02 220 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 CYP2G1PQ6ZSU1 146 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 ACSF3Q4G176 576 aaPredicted RBP11.88□□□□□ -0.51
CSPG4-201ENST00000308508 ZFAND6Q6FIF0 208 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF818PQ6ZRF7 136 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 DUX5Q96PT3 197 aa11.88□□□□□ -0.51
CSPG4-201ENST00000308508 IGHV3-72A0A0B4J1Y9 119 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 CCL8P80075 99 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF124Q15973 351 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 RPP21Q9H633 154 aaKnown RBP11.87□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF71Q9NQZ8 489 aaPredicted RBP11.87□□□□□ -0.51
CSPG4-201ENST00000308508 YBX2Q9Y2T7 364 aaKnown RBP11.87□□□□□ -0.51
CSPG4-201ENST00000308508 UPK3AO75631 287 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 TGFAP01135 160 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 IZUMO1RA6ND01 250 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 ADRA2AP08913 450 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 LINC00614P0C842 121 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 ASIPP42127 132 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 GPR6P46095 362 aaPredicted RBP11.87□□□□□ -0.51
CSPG4-201ENST00000308508 P2RY6Q15077 328 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 VKORC1L1Q8N0U8 176 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 TMEM171Q8WVE6 324 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 DLL3Q9NYJ7 618 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 TRIP6Q15654 476 aaKnown RBP11.87□□□□□ -0.51
CSPG4-201ENST00000308508 LIMS2Q7Z4I7 341 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 Q96M66 194 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 IGHV4-39P01824 125 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 REG1AP05451 166 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 FANCMQ8IYD8 2048 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF708P17019 499 aa11.87□□□□□ -0.51
CSPG4-201ENST00000308508 LINC00587B1AMM8 73 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 DEFB123Q8N688 67 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 THY1P04216 161 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 LDLRAD2Q5SZI1 272 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 COL11A1P12107 1806 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms