RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ITLN1Q8WWA0 313 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 NEU1Q99519 415 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 RTN4RQ9BZR6 473 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 TRBV6-7A0A0A0MS04 114 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 FAM90A27PA6NNH2 459 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 F2RL2O00254 374 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H4GQ99525 98 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 CYTL1Q9NRR1 136 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 TMEM242Q9NWH2 141 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 AREGP15514 252 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 ARF6P62330 175 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 PCSK4Q6UW60 755 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 TCF24Q7RTU0 167 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 VKORC1L1Q8N0U8 176 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 SCO2A0A1W2PP80 73 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 C16orf97H3BN30 126 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 CCL1P22362 96 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 FAM117AQ9C073 453 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 FOXD3Q9UJU5 478 aaPredicted RBP10.91□□□□□ -0.66
COL3A1-201ENST00000304636 ATG2BQ96BY7 2078 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 LOC107984156A0A0G2JMH3 177 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 ATP5G3P48201 142 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 TMEM78Q5T7P6 136 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 ARL17AQ8IVW1 177 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 C14orf144Q96I85 54 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 PATJQ8NI35 1801 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 PSG9Q00887 426 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 A1L4Q6 167 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 CCL8P80075 99 aa10.91□□□□□ -0.66
COL3A1-201ENST00000304636 DEFB124Q8NES8 71 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 SPSB2Q99619 263 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 SPTBP11277 2137 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 A0A1B0GW64 132 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 ZIC3O60481 467 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 SPEM2Q0P670 501 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 NRN1LQ496H8 165 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 HIST3H2BBQ8N257 126 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 WFDC1Q9HC57 220 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 CGAP01215 116 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BLQ99880 126 aa10.9□□□□□ -0.66
COL3A1-201ENST00000304636 SMIM13P0DJ93 91 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 TNFSF10P50591 281 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 TBR1Q16650 682 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 SLC25A53Q5H9E4 307 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 MTURNQ8N3F0 131 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 LRTM2Q8N967 370 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 OR4C13Q8NGP0 309 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 C1QTNF5Q9BXJ0 243 aa10.9□□□□□ -0.67
COL3A1-201ENST00000304636 MRPL13Q9BYD1 178 aaKnown RBP10.9□□□□□ -0.67
COL3A1-201ENST00000304636 NYNRINQ9P2P1 1898 aaKnown RBP10.9□□□□□ -0.67
COL3A1-201ENST00000304636 IFNL4K9M1U5 179 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 PRR33A8MZF0 331 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 C12orf77C9JDV5 145 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 SERF1AO75920 110 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF124Q15973 351 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 NIT1Q86X76 327 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 TMEM106BQ9NUM4 274 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 LAMTOR2Q9Y2Q5 125 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 SOX21Q9Y651 276 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 CHCHD2Q9Y6H1 151 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 TRAV30A0A087WSZ9 112 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 SLC25A17O43808 307 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 OR4D5Q8NGN0 318 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 TRBV24-1A0A075B6N3 115 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 STARD6P59095 220 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 ID3Q02535 119 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 RSPO4Q2I0M5 234 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 NPIPB3Q92617 1050 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 OPN3Q9H1Y3 402 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 PRDM13Q9H4Q3 707 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 F11RQ9Y624 299 aaKnown RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 IGKV1-9A0A0C4DH69 117 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 PROB1E7EW31 1015 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 CCL20P78556 96 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 C2orf83Q53S99 150 aa10.89□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF324BQ6AW86 544 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF256Q9Y2P7 627 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-201ENST00000304636 IGHV3-72A0A0B4J1Y9 119 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 PATE3B3GLJ2 98 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 COX6CP09669 75 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 PMS2CLQ68D20 193 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 A0A0A6YYD4 124 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 C17orf98A8MV24 154 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 AHRRA9YTQ3 701 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 NUDT3O95989 172 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 TMEM208Q9BTX3 173 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 IZUMO1RA6ND01 250 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 FCGR2BP31994 310 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-201ENST00000304636 FOXA3P55318 350 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-201ENST00000304636 ECSCRQ19T08 205 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 MAFAQ8NHW3 353 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-201ENST00000304636 TMEM186Q96B77 213 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 SGK494Q96LW2 274 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 NRN1Q9NPD7 142 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 OTOFQ9HC10 1997 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 SEC16AO15027 2179 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 ADMP35318 185 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 LINC00305Q7Z4B0 112 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 MBD3L1Q8WWY6 194 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 LEAP2Q969E1 77 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms