RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C10orf55Q5SWW7 151 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 CLEC19AQ6UXS0 136 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 RBPMS2Q6ZRY4 209 aaKnown RBP11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 SLC38A6Q8IZM9 456 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM217Q8N7C4 229 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 OR4S2Q8NH73 311 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 CACNG8Q8WXS5 425 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 CXorf58Q96LI9 332 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 CCDC140Q96MF4 163 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 FYTTD1Q96QD9 318 aaKnown RBP11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 OR2A7Q96R45 310 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 KRTAP17-1Q9BYP8 105 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 MLXQ9UH92 298 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 KLK9Q9UKQ9 250 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 A0A0J9YWU9 116 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 HMX3A6NHT5 357 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 ANKRD65E5RJM6 399 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 SPRY2O43597 315 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 KBTBD11O94819 623 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 SCAF4O95104 1147 aaKnown RBP11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 CRYGCP07315 174 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 HSMCR30P0CW71 290 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 GNB3P16520 340 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 RAB6AP20340 208 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 DTYMKP23919 212 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 PSMB6P28072 239 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 RPS25P62851 125 aaKnown RBP11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 PLA2G7Q13093 441 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 LYG2Q86SG7 212 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 OR1L6Q8NGR2 347 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM167AQ8TBQ9 72 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 MAFIPQ8WZ33 124 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 HSD17B10Q99714 261 aaKnown RBP11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 AIFM2Q9BRQ8 373 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 ACOT13Q9NPJ3 140 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 OR2W1Q9Y3N9 320 aa11.03□□□□□ -0.64
CCDC88B-201ENST00000301897 A0A075B6Q4 140 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 KIR2DL5BA0A0G2JN68 375 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 KIR2DL5BA0A0G2JPC4 375 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 PDCD5O14737 125 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 IL6RP08887 468 aaPredicted RBP11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 ZNF735P0CB33 412 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 DEFA4P12838 97 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 MYOD1P15172 320 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 EDN2P20800 178 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 ELLP55199 621 aaPredicted RBP11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 BTNL8Q6UX41 500 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 KIR2DL5AQ8N109 375 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 OR2C3Q8N628 320 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 KIR2DL5BQ8NHK3 375 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 FANCD2OSQ96PS1 177 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 DUSP21Q9H596 190 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 MRPL27Q9P0M9 148 aaKnown RBP11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 RBMX2Q9Y388 322 aaKnown RBP11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 UFC1Q9Y3C8 167 aa11.02□□□□□ -0.65
CCDC88B-201ENST00000301897 RAB27BO00194 218 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 HRASP01112 189 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 IGHV3-23P01764 117 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 HLA-DQB1P01920 261 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 C8orf88P0DMB2 117 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 CTRB1P17538 263 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 FABP5Q01469 135 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 MLLT11Q13015 90 aaPredicted RBP11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 HES5Q5TA89 166 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 CTRB2Q6GPI1 263 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 PUSL1Q8N0Z8 303 aaKnown RBP11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 SPAG8Q99932 426 aaPredicted RBP11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 TPRKBQ9Y3C4 175 aa11.01□□□□□ -0.65
CCDC88B-201ENST00000301897 CYB5BO43169 146 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 RPL8P62917 257 aaKnown RBP11□□□□□ -0.65
CCDC88B-201ENST00000301897 OR2B11Q5JQS5 317 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 VKORC1L1Q8N0U8 176 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 STPG3Q8N7X2 389 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 TCTEX1D2Q8WW35 142 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 DCSTAMPQ9H295 470 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 C5orf66Q9H5L9 145 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 THYN1Q9P016 225 aa11□□□□□ -0.65
CCDC88B-201ENST00000301897 TRAV1-2A0A0B4J238 106 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 IFITM5A6NNB3 132 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 CLEC3BP05452 202 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 AREGP15514 252 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 DEFB135Q30KP9 77 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 ZNF585BQ52M93 769 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 LGALS9CQ6DKI2 356 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 LAMTOR1Q6IAA8 161 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 OR4A5Q8NH83 315 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 RNF183Q96D59 192 aa10.99□□□□□ -0.65
CCDC88B-201ENST00000301897 IGLV11-55A0A075B6I3 123 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 IGKV1D-8A0A087WSZ0 117 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 E7EUB6 86 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 J3QRK9 145 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 TSPAN4O14817 238 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 RGS10O43665 173 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 HLA-GP17693 338 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 NFYAP23511 347 aaPredicted RBP10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 CRHBPP24387 322 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 RPL30P62888 115 aaKnown RBP10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 CNIH2Q6PI25 160 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 PLET1Q6UQ28 207 aa10.98□□□□□ -0.65
CCDC88B-201ENST00000301897 ZNF66Q6ZN08 573 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms