RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 OR13D1Q8NGV5 346 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 ZCCHC14Q8WYQ9 949 aaKnown RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 LHX4Q969G2 390 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 RCC1LQ96I51 464 aaKnown RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 CIB3Q96Q77 187 aaPredicted RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 TOLLIPQ9H0E2 274 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 KPTNQ9Y664 436 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 WNK2Q9Y3S1 2297 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 SRRM4A7MD48 611 aaKnown RBP9.41□□□□□ -0.9
CUX1-202ENST00000292538 FAM157AC9JC47 383 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 IGKV1D-33P01593 117 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 IGKV1-33P01594 117 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 CT45A6P0DMU7 189 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 CT45A5P0DMU8 189 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 CT45A7P0DMV0 189 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 ZNF726P1Q15940 193 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 CR1LQ2VPA4 569 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 PATZ1Q9HBE1 687 aaKnown RBP9.41□□□□□ -0.9
CUX1-202ENST00000292538 MLXQ9UH92 298 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 LINC00312Q9Y6C7 94 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 WNT2P09544 360 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 RELBQ01201 579 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 ZNF674Q2M3X9 581 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 ACSM6Q6P461 480 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 LFNGQ8NES3 379 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 C2CD4CQ8TF44 421 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 SSMEM1Q8WWF3 244 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 PINX1Q96BK5 328 aaKnown RBP9.41□□□□□ -0.9
CUX1-202ENST00000292538 ZNF251Q9BRH9 671 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 TMEM147Q9BVK8 224 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 TCF19Q9Y242 345 aa9.41□□□□□ -0.9
CUX1-202ENST00000292538 C7orf77A4D0Y5 90 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 MAP1LC3B2A6NCE7 125 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 C15orf62A8K5M9 175 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 COX7A1P24310 79 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 PAX5Q02548 391 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 RPP25LQ8N5L8 163 aaKnown RBP9.4□□□□□ -0.9
CUX1-202ENST00000292538 OR10G4Q8NGN3 311 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 OR10G9Q8NGN4 311 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 OR10G7Q8NGN6 311 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 MAP1LC3BQ9GZQ8 125 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 URGCP-MRPS24S4R325 110 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 B9A039 149 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 PAX6P26367 422 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 CD1BP29016 333 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 THBS3P49746 956 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 SPCS3P61009 180 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 RTL8BQ17RB0 113 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 COMMD1Q8N668 190 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 TCTEX1D1Q8N7M0 179 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 ST6GALNAC3Q8NDV1 305 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 IGFBPL1Q8WX77 278 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 SCRT1Q9BWW7 348 aa9.4□□□□□ -0.9
CUX1-202ENST00000292538 HCFC1P51610 2035 aa9.4□□□□□ -0.91
CUX1-202ENST00000292538 PLXNB1O43157 2135 aa9.4□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PPE2 198 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PRD5 423 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PRF3 423 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PRM7 423 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 ZNF727A8MUV8 499 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 IGHV3-48P01763 117 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 TMEM95Q3KNT9 176 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 C10orf91Q5T1B1 145 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 GATAD1Q8WUU5 269 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 HARBI1Q96MB7 349 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 NPCDR1Q9BY65 106 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 OR51B2Q9Y5P1 312 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 ARHGAP32A7KAX9 2087 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 RAI1Q7Z5J4 1906 aaPredicted RBP9.39□□□□□ -0.91
CUX1-202ENST00000292538 J3QR06 171 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 PPIHO43447 177 aaKnown RBP9.39□□□□□ -0.91
CUX1-202ENST00000292538 SCAF4O95104 1147 aaKnown RBP9.39□□□□□ -0.91
CUX1-202ENST00000292538 KIAA0141Q14154 515 aaPredicted RBP9.39□□□□□ -0.91
CUX1-202ENST00000292538 TMEM41BQ5BJD5 291 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 SLC25A48Q6ZT89 311 aaKnown RBP9.39□□□□□ -0.91
CUX1-202ENST00000292538 OR5T1Q8NG75 326 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 OR10W1Q8NGF6 305 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 CLDND2Q8NHS1 167 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 KIAA1456Q9P272 454 aa9.39□□□□□ -0.91
CUX1-202ENST00000292538 HBE1P02100 147 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 UQCRFS1P47985 274 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 UBE2G2P60604 165 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 ICAM4Q14773 271 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 DDB2Q92466 427 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 HRASP01112 189 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 MLANAQ16655 118 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 PDLIM3Q53GG5 364 aaPredicted RBP9.38□□□□□ -0.91
CUX1-202ENST00000292538 MOB3BQ86TA1 216 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 ZNF429Q86V71 674 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 FAM24BQ8N5W8 94 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 ZNF439Q8NDP4 499 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 TMEM204Q9BSN7 226 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 A6NJY4 79 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 PMS2P5A8MQ11 134 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 H3BQ15 152 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 SAA1P0DJI8 122 aaPredicted RBP9.38□□□□□ -0.91
CUX1-202ENST00000292538 LOXP28300 417 aaPredicted RBP9.38□□□□□ -0.91
CUX1-202ENST00000292538 TAGLN2P37802 199 aaKnown RBP9.38□□□□□ -0.91
CUX1-202ENST00000292538 HEPN1Q6WQI6 88 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 SAV1Q9H4B6 383 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms