RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SSX3Q99909 188 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 ACTR3CQ9C0K3 210 aaPredicted RBP16.51■□□□□ 0.23
VPS53-201ENST00000291074 TNCP24821 2201 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 FAM90A9PA6NNJ1 464 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 MBP02144 154 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 MYOD1P15172 320 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 MRPS11P82912 194 aaKnown RBP16.51■□□□□ 0.23
VPS53-201ENST00000291074 PRR30Q53SZ7 412 aaPredicted RBP16.51■□□□□ 0.23
VPS53-201ENST00000291074 OR4S2Q8NH73 311 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 TCF19Q9Y242 345 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 WDR83OSQ9Y284 106 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 GFRA3O60609 400 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 THBDP07204 575 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 BSPH1Q075Z2 132 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 ZNF439Q8NDP4 499 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 NUP37Q8NFH4 326 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 RPUSD4Q96CM3 377 aaKnown RBP16.5■□□□□ 0.23
VPS53-201ENST00000291074 IGHV2-5P01817 119 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 OR4A8P0C604 315 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 ADIPOQQ15848 244 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 FAM216AQ8WUB2 273 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 RHOVQ96L33 236 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 SIRT7Q9NRC8 400 aa16.5■□□□□ 0.23
VPS53-201ENST00000291074 TRAV38-1A0A0B4J264 116 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 TMPRSS2O15393 492 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 RD3LP0DJH9 198 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 IRF2P14316 349 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 OR4A47Q6IF82 309 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 GFRALQ6UXV0 394 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 SMIM7Q9BQ49 75 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 NCOR1P1Q9H4R4 102 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 IDI2-AS1Q9NZ38 188 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 C17orf112F2Z3M2 114 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 PSMB3P49720 205 aa16.49■□□□□ 0.23
VPS53-201ENST00000291074 ITGB1BP1O14713 200 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 NDUFB7P17568 137 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 KIR2DS2P43631 304 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 PNRC1Q12796 327 aaPredicted RBP16.48■□□□□ 0.23
VPS53-201ENST00000291074 C1QL4Q86Z23 238 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 OR52E5Q8NH55 327 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 TLN1Q9Y490 2541 aaKnown RBP16.48■□□□□ 0.23
VPS53-201ENST00000291074 B4DEV8 164 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 PRSS46E5RG02 174 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 CYB5BO43169 146 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 CDC34P49427 236 aaPredicted RBP16.48■□□□□ 0.23
VPS53-201ENST00000291074 PMS2P11Q13670 270 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 TREML4Q6UXN2 200 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 ASCL5Q7RTU5 278 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 OR4F5Q8NH21 305 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 ZCCHC14Q8WYQ9 949 aaKnown RBP16.48■□□□□ 0.23
VPS53-201ENST00000291074 OR4F4Q96R69 305 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 MS4A5Q9H3V2 200 aa16.48■□□□□ 0.23
VPS53-201ENST00000291074 CXorf65A6NEN9 183 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 C15orf61A6NNL5 157 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 PAGE4O60829 102 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 FOXC1Q12948 553 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 ADIRFQ15847 76 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 PATZ1Q9HBE1 687 aaKnown RBP16.47■□□□□ 0.23
VPS53-201ENST00000291074 METTL1Q9UBP6 276 aaKnown RBP16.47■□□□□ 0.23
VPS53-201ENST00000291074 GAB2Q9UQC2 676 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 THBS3P49746 956 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 KIAA0141Q14154 515 aaPredicted RBP16.47■□□□□ 0.23
VPS53-201ENST00000291074 TEX36Q5VZQ5 186 aa16.47■□□□□ 0.23
VPS53-201ENST00000291074 ZNF729A6NN14 1252 aaPredicted RBP16.46■□□□□ 0.23
VPS53-201ENST00000291074 ACOT6Q3I5F7 207 aaPredicted RBP16.46■□□□□ 0.23
VPS53-201ENST00000291074 RAB9BQ9NP90 201 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 MIOXQ9UGB7 285 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 C17orf100A8MU93 164 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 AP4M1O00189 453 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 PDLIM3Q53GG5 364 aaPredicted RBP16.46■□□□□ 0.23
VPS53-201ENST00000291074 NCMAPQ5T1S8 102 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.46■□□□□ 0.23
VPS53-201ENST00000291074 MGST2Q99735 147 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 POLEQ07864 2286 aa16.46■□□□□ 0.23
VPS53-201ENST00000291074 FCN3O75636 299 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 YIF1AO95070 293 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 RPP30P78346 268 aaKnown RBP16.45■□□□□ 0.22
VPS53-201ENST00000291074 SPACA3Q8IXA5 215 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 HINT2Q9BX68 163 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 PARLQ9H300 379 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 KBTBD11O94819 623 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 COL8A2P25067 703 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 ARFGEF3Q5TH69 2177 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 MIC13Q5XKP0 118 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 MANBALQ9NQG1 85 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 ELOVL5Q9NYP7 299 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 NAT8Q9UHE5 227 aa16.45■□□□□ 0.22
VPS53-201ENST00000291074 RPUSD1Q9UJJ7 312 aaKnown RBP16.45■□□□□ 0.22
VPS53-201ENST00000291074 CLDN34H7C241 214 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 OPN1MWP04001 364 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 IGKV1-16P04430 117 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 OPN1MW2P0DN77 364 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 OPN1MW3P0DN78 364 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 CYP2G1PQ6ZSU1 146 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 RND1Q92730 232 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 DIRC2Q96SL1 478 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 TMEM14BQ9NUH8 114 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 CCL3L1P16619 93 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 TNFRSF1AP19438 455 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 C1orf159Q96HA4 380 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms