RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OR10J4P0C629 311 aa12□□□□□ -0.49
SDC1-201ENST00000254351 GABRA2P47869 451 aa12□□□□□ -0.49
SDC1-201ENST00000254351 DUSP3P51452 185 aaPredicted RBP12□□□□□ -0.49
SDC1-201ENST00000254351 PCOLCEQ15113 449 aa12□□□□□ -0.49
SDC1-201ENST00000254351 ATP6V1FQ16864 119 aa12□□□□□ -0.49
SDC1-201ENST00000254351 RPEL1Q2QD12 228 aa12□□□□□ -0.49
SDC1-201ENST00000254351 GGNQ86UU5 652 aa12□□□□□ -0.49
SDC1-201ENST00000254351 Q8N976 141 aa12□□□□□ -0.49
SDC1-201ENST00000254351 IL36BQ9NZH7 164 aa12□□□□□ -0.49
SDC1-201ENST00000254351 GATA2P23769 480 aaPredicted RBP11.99□□□□□ -0.49
SDC1-201ENST00000254351 CRYBB3P26998 211 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 SSTR5P35346 364 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 SPEM1Q8N4L4 309 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 BORCS7Q96B45 105 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 KCNIP2Q9NS61 270 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 PSG11Q9UQ72 335 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 LINC00473A8K010 186 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 CELA3AP09093 270 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 CD24P25063 80 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 BRWD1-AS2P59051 145 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 ALKBH6Q3KRA9 238 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 TRIM61Q5EBN2 209 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 GMPPAQ96IJ6 420 aaPredicted RBP11.99□□□□□ -0.49
SDC1-201ENST00000254351 MS4A5Q9H3V2 200 aa11.99□□□□□ -0.49
SDC1-201ENST00000254351 A8MXE2 369 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 DKK1O94907 266 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 P04436 131 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 NINJ1Q92982 152 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 LOXL4Q96JB6 756 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 PI4KAP42356 2102 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 LOC105371242A0A075B767 164 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 NKX6-3A6NJ46 265 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 FAM166BA8MTA8 275 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 PSPNO60542 156 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 FCGR3BO75015 233 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 SELENOTP62341 195 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 SGK494Q96LW2 274 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 SSBP4Q9BWG4 385 aaPredicted RBP11.98□□□□□ -0.49
SDC1-201ENST00000254351 ZNF391Q9UJN7 358 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 SLC45A2Q9UMX9 530 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 TNCP24821 2201 aa11.98□□□□□ -0.49
SDC1-201ENST00000254351 IGHV5-10-1A0A0J9YXX1 117 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 C15orf62A8K5M9 175 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 TMPRSS2O15393 492 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 NEURL1O76050 574 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 EDDM3AQ14507 147 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 LDLRAD2Q5SZI1 272 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM216AQ8WUB2 273 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 SIT1Q9Y3P8 196 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 LNP1A1A4G5 178 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 AHRRA9YTQ3 701 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 CRYABP02511 175 aaKnown RBP11.97□□□□□ -0.49
SDC1-201ENST00000254351 OR9G9P0C7N8 305 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 CCL4P13236 92 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 TSPOP30536 169 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 LGALS4P56470 323 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 TCTAP57738 103 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 GNG3P63215 75 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 ACSF3Q4G176 576 aaPredicted RBP11.97□□□□□ -0.49
SDC1-201ENST00000254351 SPINK14Q6IE38 97 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 ZNF738Q8NE65 137 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 CLEC7AQ9BXN2 247 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 STRADBQ9C0K7 418 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 GP6Q9HCN6 339 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 TRAV3A0A0B4J244 114 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 PINLYPA6NC86 204 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A10PA6NDY2 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A18PA6NE21 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A16PA6NEW6 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A20PA6NIJ5 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A8PA6NJQ4 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A7PA6NKC0 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 SH2D7A6NKC9 451 aaPredicted RBP11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A22PA8MWA6 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A12PA8MX19 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A5PA8MXJ8 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A23PA8MXZ1 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A15PP0C7V4 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A13PP0C7W8 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A14PP0C7W9 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 FAM90A24PP0C7X0 464 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 PRB4P10163 310 aaPredicted RBP11.97□□□□□ -0.49
SDC1-201ENST00000254351 FKBP2P26885 142 aaKnown RBP11.97□□□□□ -0.49
SDC1-201ENST00000254351 CENPWQ5EE01 88 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 SPSB4Q96A44 273 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 PRDM14Q9GZV8 571 aa11.97□□□□□ -0.49
SDC1-201ENST00000254351 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.96□□□□□ -0.49
SDC1-201ENST00000254351 MYOD1P15172 320 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 CAMPP49913 170 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 UBE2V1Q13404 147 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 SAPCD1Q5SSQ6 148 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 PRR27Q6MZM9 219 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 RNASEKQ6P5S7 137 aaKnown RBP11.96□□□□□ -0.49
SDC1-201ENST00000254351 TREML4Q6UXN2 200 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 GALMQ96C23 342 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 LINC00479Q96M42 142 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 MGST2Q99735 147 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 PCED1AQ9H1Q7 454 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 KCNIP1Q9NZI2 227 aa11.96□□□□□ -0.49
SDC1-201ENST00000254351 GJE1A6NN92 205 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 148.4 ms