RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 SULT1A2P50226 295 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 OR2B8PP59922 312 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 SSX2Q16385 188 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 OR13D1Q8NGV5 346 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 IGHV2-26A0A0B4J1V2 119 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 C22orf46C9J442 243 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 DFFBO76075 338 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 PRRX1P54821 245 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 PDLIM3Q53GG5 364 aaPredicted RBP12.12□□□□□ -0.47
CCDC47-201ENST00000225726 SPANXN5Q5MJ07 72 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 OR5AN1Q8NGI8 311 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 NKX6-2Q9C056 277 aaPredicted RBP12.12□□□□□ -0.47
CCDC47-201ENST00000225726 MFSD2BA6NFX1 497 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 CEBPZOSA8MTT3 80 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 H0YJW9 148 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 SPCS3P61009 180 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 TMEM14EPQ6UXP3 125 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 PRO1933Q9H354 126 aa12.12□□□□□ -0.47
CCDC47-201ENST00000225726 OR4A47Q6IF82 309 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 SAT2Q96F10 170 aaPredicted RBP12.11□□□□□ -0.47
CCDC47-201ENST00000225726 NABP2Q9BQ15 211 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 PCGF1Q9BSM1 259 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 CLEC7AQ9BXN2 247 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 ONECUT1Q9UBC0 465 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 LOC105371242A0A075B767 164 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 METTL15P1P0C7V9 234 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 HBG1P69891 147 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 HBG2P69892 147 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 ZNF429Q86V71 674 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 IGFBPL1Q8WX77 278 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 ZDHHC16Q969W1 377 aa12.11□□□□□ -0.47
CCDC47-201ENST00000225726 DOCK11Q5JSL3 2073 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 C15orf61A6NNL5 157 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 IFNA17P01571 189 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 HSD17B11Q8NBQ5 300 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 BEND2Q8NDZ0 799 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 OSR1Q8TAX0 266 aaPredicted RBP12.1□□□□□ -0.47
CCDC47-201ENST00000225726 SSX3Q99909 188 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 STRAPQ9Y3F4 350 aaKnown RBP12.1□□□□□ -0.47
CCDC47-201ENST00000225726 TRAV3A0A0B4J244 114 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 ZNF705EA8MWA4 302 aaPredicted RBP12.1□□□□□ -0.47
CCDC47-201ENST00000225726 HLA-DRB5Q30154 266 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 OR4C12Q96R67 309 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 PLA2G2EQ9NZK7 142 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 FOXA2Q9Y261 457 aaPredicted RBP12.1□□□□□ -0.47
CCDC47-201ENST00000225726 M0R1W7 72 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 IGLV1-47P01700 117 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 IGKV1-16P04430 117 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 REG1BP48304 166 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 TMEM177Q53S58 311 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 HSD17B13Q7Z5P4 300 aaPredicted RBP12.1□□□□□ -0.47
CCDC47-201ENST00000225726 HAPLN4Q86UW8 402 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 PDPNQ86YL7 162 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 TGIF2LXQ8IUE1 241 aa12.1□□□□□ -0.47
CCDC47-201ENST00000225726 CRYBA1P05813 215 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 IL6RP08887 468 aaPredicted RBP12.09□□□□□ -0.47
CCDC47-201ENST00000225726 PPT1P50897 306 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 PDZD11Q5EBL8 140 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 ARL16Q0P5N6 197 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 DIAPH2-AS1Q14236 149 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 GUCA2BQ16661 112 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 EIF4E3Q8N5X7 224 aaKnown RBP12.09□□□□□ -0.47
CCDC47-201ENST00000225726 CLCC1Q96S66 551 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 SH3BGRL3Q9H299 93 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 TMEM14BQ9NUH8 114 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 AMMECR1Q9Y4X0 333 aaPredicted RBP12.09□□□□□ -0.47
CCDC47-201ENST00000225726 CXorf65A6NEN9 183 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 IFNA5P01569 189 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 BLOC1S1P78537 153 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 SPINK9Q5DT21 86 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 ZNF525Q8N782 197 aa12.09□□□□□ -0.47
CCDC47-201ENST00000225726 LRBAP50851 2863 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 SCAF4O95104 1147 aaKnown RBP12.08□□□□□ -0.48
CCDC47-201ENST00000225726 IGHV2-5P01817 119 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 ATP6V0CP27449 155 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 Q8N7P7 452 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 GNPNAT1Q96EK6 184 aaPredicted RBP12.08□□□□□ -0.48
CCDC47-201ENST00000225726 PRNDQ9UKY0 176 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 WASHC3Q9Y3C0 194 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 UPK2O00526 184 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 RAB5CP51148 216 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 LHX4Q969G2 390 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 FLYWCH2Q96CP2 140 aaKnown RBP12.08□□□□□ -0.48
CCDC47-201ENST00000225726 CCL19Q99731 98 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 ATG101Q9BSB4 218 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 BET1LQ9NYM9 111 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 TCF19Q9Y242 345 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 MALRD1Q5VYJ5 2156 aa12.08□□□□□ -0.48
CCDC47-201ENST00000225726 SRRM4A7MD48 611 aaKnown RBP12.07□□□□□ -0.48
CCDC47-201ENST00000225726 KRBOX1C9JBD0 128 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 ARG1P05089 322 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 FGF2P09038 288 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 MC5RP33032 325 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 SLC38A11Q08AI6 406 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 PUSL1Q8N0Z8 303 aaKnown RBP12.07□□□□□ -0.48
CCDC47-201ENST00000225726 KIR3DL3Q8N743 410 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 OR4C13Q8NGP0 309 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 HARBI1Q96MB7 349 aa12.07□□□□□ -0.48
CCDC47-201ENST00000225726 PARD6GQ9BYG4 376 aaPredicted RBP12.07□□□□□ -0.48
CCDC47-201ENST00000225726 BUB1B-PAK6H3BSN5 160 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms