RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TMEM106BQ9NUM4 274 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 IL17BQ9UHF5 180 aa10.29□□□□□ -0.76
NUP88-201ENST00000225696 COL27A1Q8IZC6 1860 aaPredicted RBP10.28□□□□□ -0.76
NUP88-201ENST00000225696 C9orf172C9J069 976 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 PRSS46E5RG02 174 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 IRF2P14316 349 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 KITLGP21583 273 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 YPEL3P61236 119 aaPredicted RBP10.28□□□□□ -0.76
NUP88-201ENST00000225696 KRTCAP3Q53RY4 240 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 SLC35E4Q6ICL7 350 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 C1orf229Q6ZS94 237 aaPredicted RBP10.28□□□□□ -0.76
NUP88-201ENST00000225696 GCNT2Q8N0V5 402 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 KLF14Q8TD94 323 aaPredicted RBP10.28□□□□□ -0.76
NUP88-201ENST00000225696 GGTLC1Q9BX51 225 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 MSL2Q9HCI7 577 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 MDFIC2A0A1B0GVS7 189 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 STAG3L2P0CL84 134 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 STAG3L3P0CL85 134 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 MEOX1P50221 254 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 DUSP3P51452 185 aaPredicted RBP10.28□□□□□ -0.76
NUP88-201ENST00000225696 OR5I1Q13606 314 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 RAB1CQ92928 201 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 TMEM68Q96MH6 324 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 HSPB9Q9BQS6 159 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 SPRR3Q9UBC9 169 aa10.28□□□□□ -0.76
NUP88-201ENST00000225696 AHRRA9YTQ3 701 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 AGFG2O95081 481 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 BTF3P20290 206 aaKnown RBP10.27□□□□□ -0.77
NUP88-201ENST00000225696 IGHV1-2P23083 117 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 RPL31P62899 125 aaKnown RBP10.27□□□□□ -0.77
NUP88-201ENST00000225696 EDDM3AQ14507 147 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 ZNF718Q3SXZ3 478 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 RPL39P5Q59GN2 51 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 DCAF10Q5QP82 559 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 WDR82Q6UXN9 313 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 ACP7Q6ZNF0 438 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 OR10G8Q8NGN5 311 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 TAAR6Q96RI8 345 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 SPRY4Q9C004 299 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 PAM16Q9Y3D7 125 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 TNCP24821 2201 aa10.27□□□□□ -0.77
NUP88-201ENST00000225696 IQCF6A8MYZ5 107 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 SPINK4O60575 86 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 NPSP0C0P6 89 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 DUTP33316 252 aaKnown RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 COMPP49747 757 aaPredicted RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 ZNF134P52741 427 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 ZNF90Q03938 601 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 TMEM249Q2WGJ8 235 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 MRPL18Q9H0U6 180 aaKnown RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 HEYLQ9NQ87 328 aaPredicted RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 RYDENQ9NUL5 291 aaKnown RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 CADP27708 2225 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 C15orf65H3BRN8 121 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 GFRA3O60609 400 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 MYOD1P15172 320 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 OPRK1P41145 380 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 VDAC2P45880 294 aaPredicted RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 IER3P46695 156 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 SELENOTP62341 195 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 PDLIM3Q53GG5 364 aaPredicted RBP10.26□□□□□ -0.77
NUP88-201ENST00000225696 PRAMEF5Q5TYX0 476 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 ASPHD1Q5U4P2 390 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 CD177Q8N6Q3 437 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 VN1R17PQ8TDU5 208 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 TMEM208Q9BTX3 173 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 PARD6AQ9NPB6 346 aa10.26□□□□□ -0.77
NUP88-201ENST00000225696 ICE1Q9Y2F5 2266 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 TDGF1P13385 188 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 CRISP2P16562 243 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 UBE2NP61088 152 aaKnown RBP10.25□□□□□ -0.77
NUP88-201ENST00000225696 ARSJQ5FYB0 599 aaPredicted RBP10.25□□□□□ -0.77
NUP88-201ENST00000225696 TEX43Q6ZNM6 134 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 NANOS1Q8WY41 292 aaKnown RBP10.25□□□□□ -0.77
NUP88-201ENST00000225696 LEAP2Q969E1 77 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 FAM122AQ96E09 287 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 HSD17B10Q99714 261 aaKnown RBP10.25□□□□□ -0.77
NUP88-201ENST00000225696 A0A1B0GWJ7 208 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 CXorf1O96002 111 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 SP1P08047 785 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 GCHFRP30047 84 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 SLC35B1P78383 322 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 EFNB3Q15768 340 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 ATP1A1-AS1Q5TC04 95 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 ST6GALNAC3Q8NDV1 305 aa10.25□□□□□ -0.77
NUP88-201ENST00000225696 FCN1O00602 326 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 IL6RP08887 468 aaPredicted RBP10.24□□□□□ -0.77
NUP88-201ENST00000225696 GPR12P47775 334 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 FABP6P51161 128 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 LGALS4P56470 323 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 RELBQ01201 579 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 OR1L6Q8NGR2 347 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 OR4A16Q8NH70 328 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 FAM103A1Q9BTL3 118 aaKnown RBP10.24□□□□□ -0.77
NUP88-201ENST00000225696 LRFN3Q9BTN0 628 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 IL36BQ9NZH7 164 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 FBXL7Q9UJT9 491 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 LSM4Q9Y4Z0 139 aaKnown RBP10.24□□□□□ -0.77
NUP88-201ENST00000225696 SVILO95425 2214 aa10.24□□□□□ -0.77
NUP88-201ENST00000225696 M0R1X1 148 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms