RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-229	ENST00000641891	RAB7A	P51149	207 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	ERVK-16	P61578	105 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	RELB	Q01201	579 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	CENPV	Q7Z7K6	275 aa	Predicted RBP	13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	FAM24B	Q8N5W8	94 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	ZNF439	Q8NDP4	499 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	FAM216A	Q8WUB2	273 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	SLC25A22	Q9H936	323 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	IDI2-AS1	Q9NZ38	188 aa		13.96	□□□□□ -0.17
PHGDH-229	ENST00000641891	ZNF727	A8MUV8	499 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	RBFOX2	O43251	390 aa	Known RBP eCLIP	13.96	□□□□□ -0.18	7e-8	■■□□□ 12.4
PHGDH-229	ENST00000641891	NQO2	P16083	231 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	NDUFB7	P17568	137 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	HABP2	Q14520	560 aa	Predicted RBP	13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	VWC2	Q2TAL6	325 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	AARD	Q4LEZ3	155 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	ZNF383	Q8NA42	475 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	WFIKKN1	Q96NZ8	548 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	NPCDR1	Q9BY65	106 aa		13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	UNKL	Q9H9P5	680 aa	Known RBP	13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	CISD1	Q9NZ45	108 aa	Known RBP	13.96	□□□□□ -0.18
PHGDH-229	ENST00000641891	FCN3	O75636	299 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	DEFA4	P12838	97 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	RAB11A	P62491	216 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	GNB2	P62879	340 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	TLE1	Q04724	770 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	FFAR4	Q5NUL3	377 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	TET2	Q6N021	2002 aa	Predicted RBP	13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	TUBA4B	Q9H853	241 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	ITGB1BP1	O14713	200 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	FOLR2	P14207	255 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	SPCS3	P61009	180 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	DLK1	P80370	383 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	MRPS11	P82912	194 aa	Known RBP	13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	FAM90A2P	Q658T7	463 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR4S2	Q8NH73	311 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	NEUROG1	Q92886	237 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	TMPRSS5	Q9H3S3	457 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	SLC39A9	Q9NUM3	307 aa		13.95	□□□□□ -0.18
PHGDH-229	ENST00000641891	ZNF729	A6NN14	1252 aa	Predicted RBP	13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	FAM90A9P	A6NNJ1	464 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	RRH	O14718	337 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	MT-ND4L	P03901	98 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	TNFRSF1A	P19438	455 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	TAGLN2	P37802	199 aa	Known RBP	13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	KIR2DS2	P43631	304 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	VDAC2	P45880	294 aa	Predicted RBP	13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	CA5BP1	Q8WTZ4	195 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	LHX4	Q969G2	390 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	GAB2	Q9UQC2	676 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	MAP1B	P46821	2468 aa	Known RBP	13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	ADGRG4	Q8IZF6	3080 aa		13.94	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR2C1	O95371	312 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	IFNA10	P01566	189 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	MDK	P21741	143 aa	Predicted RBP	13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR10G4	Q8NGN3	311 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR10G9	Q8NGN4	311 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR10G7	Q8NGN6	311 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	NIPSNAP3B	Q9BS92	247 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	SAP30L	Q9HAJ7	183 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	RAB9B	Q9NP90	201 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	HEYL	Q9NQ87	328 aa	Predicted RBP	13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	PRELID1	Q9Y255	219 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	MYOD1	P15172	320 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	ABHD12	Q8N2K0	398 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891		Q8N7P7	452 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	TMEM170A	Q8WVE7	144 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	CORO2A	Q92828	525 aa		13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	YLPM1	P49750	1951 aa	Known RBP	13.93	□□□□□ -0.18
PHGDH-229	ENST00000641891	NKX6-3	A6NJ46	265 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	NDUFA2	O43678	99 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	RAB5A	P20339	215 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	THBS3	P49746	956 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR4A47	Q6IF82	309 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	TVP23C	Q96ET8	276 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	RHOV	Q96L33	236 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	YPEL4	Q96NS1	127 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	LINC00574	Q9H8X3	128 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	SLC25A10	Q9UBX3	287 aa	Predicted RBP	13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	RPUSD1	Q9UJJ7	312 aa	Known RBP	13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	TCF19	Q9Y242	345 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	KALRN	O60229	2985 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	PCNX1	Q96RV3	2341 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	SMCO3	A2RU48	225 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	CCL3L1	P16619	93 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	OR52E5	Q8NH55	327 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	GATAD1	Q8WUU5	269 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	CCL17	Q92583	94 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	RND1	Q92730	232 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	DIRC2	Q96SL1	478 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	VAX2	Q9UIW0	290 aa		13.92	□□□□□ -0.18
PHGDH-229	ENST00000641891	SHISA9	B4DS77	424 aa		13.91	□□□□□ -0.18
PHGDH-229	ENST00000641891	GFRA3	O60609	400 aa		13.91	□□□□□ -0.18
PHGDH-229	ENST00000641891	CD1B	P29016	333 aa		13.91	□□□□□ -0.18
PHGDH-229	ENST00000641891	HOXA1	P49639	335 aa	Predicted RBP	13.91	□□□□□ -0.18
PHGDH-229	ENST00000641891	DMRTC2	Q8IXT2	367 aa	Predicted RBP	13.91	□□□□□ -0.18
PHGDH-229	ENST00000641891	ZNF709	Q8N972	641 aa		13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms