RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NDUFB6O95139 128 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 OR2H2O95918 312 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 LHBP01229 141 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 SFTA3P0C7M3 94 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 CGB3P0DN86 165 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 PSG2P11465 335 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 HOXD3P31249 432 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TCTAP57738 103 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 VN1R4Q7Z5H5 301 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 LINC01356Q8N9X3 169 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 LRRC3BQ96PB8 259 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 NTN4Q9HB63 628 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 RND2P52198 227 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 ATP1A1-AS1Q5TC04 95 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 C19orf24Q9BVV8 132 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 NKX2-6A6NCS4 301 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 J3QW42 95 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 UPK3AO75631 287 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 ZFPL1O95159 310 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 WNT2P09544 360 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 ZP4Q12836 540 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 MESTQ5EB52 335 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 MCRIP2Q9BUT9 160 aaKnown RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 MRPL13Q9BYD1 178 aaKnown RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 PKIBQ9C010 78 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 VAX2Q9UIW0 290 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 B4DSR2 109 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TBR1Q16650 682 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TTC32Q5I0X7 151 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 RIPPLY2Q5TAB7 128 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 SOSTQ9BQB4 213 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 SLC25A37Q9NYZ2 338 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 H0Y980 276 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 PITX3O75364 302 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 KBTBD11O94819 623 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 EFEMP2O95967 443 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 POLR2IP36954 125 aaKnown RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 ATP5IP56385 69 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 PSG4Q00888 419 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 PMS2P11Q13670 270 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 HLA-DRB5Q30154 266 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM177Q53S58 311 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 SLC25A38Q96DW6 304 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 RNASE4P34096 147 aaKnown RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 SRSF4Q08170 494 aaKnown RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 UNC119Q13432 240 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 SRSF7Q16629 238 aaKnown RBP eCLIP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 GCSAMLQ5JQS6 135 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 SAPCD1Q5SSQ6 148 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 WDR89Q96FK6 387 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 JPT1Q9UK76 154 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 A0A0J9YW62 118 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CLDN34H7C241 214 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 PYCARD-AS1I3L0S3 204 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 ERVH48-1M5A8F1 160 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CSF2RBP32927 897 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 ZP1P60852 638 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 FUNDC1Q8IVP5 155 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 LRRC75AQ8NAA5 344 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 OR51G1Q8NGK1 321 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 B4DEV8 164 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF146Q15072 292 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM37Q8WXS4 190 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 DNAJC4Q9NNZ3 241 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TUBD1Q9UJT1 453 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 LRRK1Q38SD2 2015 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 COX5BP10606 129 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CDKN1AP38936 164 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 SELENOHQ8IZQ5 122 aaKnown RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CCL28Q9NRJ3 127 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TMEFF2Q9UIK5 374 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 FBXL7Q9UJT9 491 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 PXMP4Q9Y6I8 212 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 LOC390937A0A1W2PQ73 354 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM50BP56557 158 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 POLR2GP62487 172 aaKnown RBP eCLIP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM88Q6PEY1 159 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 SAXO1Q8IYX7 474 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 AKIRIN1Q9H9L7 192 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 EDA2RQ9HAV5 297 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TOMM7Q9P0U1 55 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 NRXN2Q9P2S2 1712 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 TNFSF18Q9UNG2 199 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 FAM74A7A6NL05 159 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 C1QBP02746 253 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 IL4P05112 153 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 REG1AP05451 166 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CELA2AP08217 269 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CGB7P0DN87 165 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 SLC25A16P16260 332 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 GNLYP22749 145 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 CKS1BP61024 79 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 LRTM2Q8N967 370 aa5.26□□□□□ -1.57
SCN1A-217ENST00000637988 C11orf68Q9H3H3 251 aaKnown RBP5.26□□□□□ -1.57
SCN1A-217ENST00000637988 LCTP09848 1927 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 A0A087WX48 190 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 AP4M1O00189 453 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 EIF3GO75821 320 aaKnown RBP eCLIP5.25□□□□□ -1.57
SCN1A-217ENST00000637988 TCL1AP56279 114 aa5.25□□□□□ -1.57
SCN1A-217ENST00000637988 GLDNQ6ZMI3 551 aaPredicted RBP5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms