RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 LRRC37A5PQ49AS3 106 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 LDLRAD2Q5SZI1 272 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 CCDC144NLQ6NUI1 221 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 PRSS54Q6PEW0 395 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 LHFPL4Q7Z7J7 247 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 ZNF546Q86UE3 836 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 PDZD9Q8IXQ8 264 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 OR4C13Q8NGP0 309 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 MALSU1Q96EH3 234 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 RHOVQ96L33 236 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 C7orf69Q9H7B7 122 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 CACNG5Q9UF02 275 aa9.51□□□□□ -0.89
CLN6-223ENST00000637823 FXYD6-FXYD2A0A087WZ82 144 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 IGHV1-69DA0A0B4J2H0 117 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 A0A1W2PPI3 338 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 FAM90A26D6RGX4 464 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 K7EPK0 472 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 NPFFO15130 113 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 SHOXO15266 292 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 SCGB1D2O95969 90 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 IGHV1-69P01742 117 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 IGKV1-16P04430 117 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 IGHV4-31P0DP07 118 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 CD1BP29016 333 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 LGALS7P47929 136 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 S100A10P60903 97 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 RPS16P62249 146 aaKnown RBP9.5□□□□□ -0.89
CLN6-223ENST00000637823 IZUMO4Q1ZYL8 232 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 TMEM249Q2WGJ8 235 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 CXorf66Q5JRM2 361 aaPredicted RBP9.5□□□□□ -0.89
CLN6-223ENST00000637823 FAM71E2Q8N5Q1 922 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 RNF5Q99942 180 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 MS4A7Q9GZW8 240 aaPredicted RBP9.5□□□□□ -0.89
CLN6-223ENST00000637823 CACFD1Q9UGQ2 172 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 LSM5Q9Y4Y9 91 aaKnown RBP9.5□□□□□ -0.89
CLN6-223ENST00000637823 HILPDAQ9Y5L2 63 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 POMT1Q9Y6A1 747 aa9.5□□□□□ -0.89
CLN6-223ENST00000637823 H0YIZ8 118 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 DEDDO75618 318 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 TGFAP01135 160 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 IL6RP08887 468 aaPredicted RBP9.49□□□□□ -0.89
CLN6-223ENST00000637823 HABP2Q14520 560 aaPredicted RBP9.49□□□□□ -0.89
CLN6-223ENST00000637823 SSX2Q16385 188 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 CYB5R2Q6BCY4 276 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 OR4A47Q6IF82 309 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 SSX9Q7RTT3 188 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 FOXRED2Q8IWF2 684 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 VKORC1L1Q8N0U8 176 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 PIP4P2Q8N4L2 257 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 MAPK1IP1LQ8NDC0 245 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 OR4A16Q8NH70 328 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 AJUBAQ96IF1 538 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 HARBI1Q96MB7 349 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 TMEM140Q9NV12 185 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 MBD2Q9UBB5 411 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 TNCP24821 2201 aa9.49□□□□□ -0.89
CLN6-223ENST00000637823 IGHV3-72A0A0B4J1Y9 119 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 SRRM4A7MD48 611 aaKnown RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 E5RGE8 158 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 TIMM23O14925 209 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 MED6O75586 246 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 OR9G9P0C7N8 305 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 PVALBP20472 110 aaPredicted RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 SAA4P35542 130 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 NUP62P37198 522 aaPredicted RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 RELBQ01201 579 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 LGALSLQ3ZCW2 172 aaPredicted RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 AARDQ4LEZ3 155 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 GPR157Q5UAW9 335 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 LAMTOR1Q6IAA8 161 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 PUSL1Q8N0Z8 303 aaKnown RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 C9orf62Q8N4C0 152 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 INO80EQ8NBZ0 244 aaPredicted RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 WFDC11Q8NEX6 87 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 OR4A5Q8NH83 315 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 GRPEL2Q8TAA5 225 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 CFHR4Q92496 578 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 DCUN1D4Q92564 292 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 TSNAXQ99598 290 aaKnown RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 BET1LQ9NYM9 111 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 OR5AC2Q9NZP5 309 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 HSPB7Q9UBY9 170 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 TNFSF18Q9UNG2 199 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 RCL1Q9Y2P8 373 aaKnown RBP9.48□□□□□ -0.89
CLN6-223ENST00000637823 NSG2Q9Y328 171 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 HECTD1Q9ULT8 2610 aa9.48□□□□□ -0.89
CLN6-223ENST00000637823 A0A0D9SG52 128 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 L7N2F9 121 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 WRBO00258 174 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 UPK2O00526 184 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 ARPC5O15511 151 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 SYNGR2O43760 224 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 CHST1O43916 411 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 RBMXL2O75526 392 aaKnown RBP9.47□□□□□ -0.89
CLN6-223ENST00000637823 IGLV2-23P01705 113 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 C4BPBP20851 252 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 BPIFB3P59826 476 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 UBE2KP61086 200 aa9.47□□□□□ -0.89
CLN6-223ENST00000637823 POLR2GP62487 172 aaKnown RBP eCLIP9.47□□□□□ -0.89
CLN6-223ENST00000637823 VAMP2P63027 116 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms