RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MBD6Q96DN6 1003 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 RHOVQ96L33 236 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 MFFQ9GZY8 342 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 ST8SIA3O43173 380 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 TSC22D2O75157 780 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 NQO2P16083 231 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 OR2B8PP59922 312 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 RTL8BQ17RB0 113 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 TPTE2P1Q5T6R2 138 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 TMEM65Q6PI78 240 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 TMEM140Q9NV12 185 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 DPM3Q9P2X0 92 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 POMT1Q9Y6A1 747 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 CCDC168Q8NDH2 2452 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 SSSCA1O60232 199 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 TMEM50AO95807 157 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 LYL1P12980 280 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 CLEC9AQ6UXN8 241 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 REG4Q9BYZ8 158 aa16.23■□□□□ 0.19
CLN3-250ENST00000636839 A0A1W2PPI3 338 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 APOA2P02652 100 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 GAPDHP04406 335 aaKnown RBP16.22■□□□□ 0.19
CLN3-250ENST00000636839 SLC25A6P12236 298 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 CD24P25063 80 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 SSX2Q16385 188 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 FBLN7Q53RD9 439 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 SPINK9Q5DT21 86 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 OR4A47Q6IF82 309 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 HIF1ANQ9NWT6 349 aa16.22■□□□□ 0.19
CLN3-250ENST00000636839 AMMECR1Q9Y4X0 333 aaPredicted RBP16.22■□□□□ 0.19
CLN3-250ENST00000636839 LEUTXA8MZ59 168 aa16.21■□□□□ 0.19
CLN3-250ENST00000636839 L7N2F9 121 aa16.21■□□□□ 0.19
CLN3-250ENST00000636839 CHST1O43916 411 aa16.21■□□□□ 0.19
CLN3-250ENST00000636839 MYOD1P15172 320 aa16.21■□□□□ 0.19
CLN3-250ENST00000636839 IFITM2Q01629 132 aa16.21■□□□□ 0.19
CLN3-250ENST00000636839 AJUBAQ96IF1 538 aa16.21■□□□□ 0.19
CLN3-250ENST00000636839 QTRT1Q9BXR0 403 aaKnown RBP16.21■□□□□ 0.19
CLN3-250ENST00000636839 CENPVL3A0A0U1RRI6 287 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 B4DSR2 109 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 TIMM23O14925 209 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 SHOXO15266 292 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 TMUB2Q71RG4 321 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 PIP4P2Q8N4L2 257 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 WFDC11Q8NEX6 87 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 FLYWCH2Q96CP2 140 aaKnown RBP16.21■□□□□ 0.18
CLN3-250ENST00000636839 C11orf1Q9H5F2 150 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 WASHC3Q9Y3C0 194 aa16.21■□□□□ 0.18
CLN3-250ENST00000636839 RBMXL2O75526 392 aaKnown RBP16.2■□□□□ 0.18
CLN3-250ENST00000636839 ATG12O94817 140 aa16.2■□□□□ 0.18
CLN3-250ENST00000636839 AVPP01185 164 aa16.2■□□□□ 0.18
CLN3-250ENST00000636839 ERVK-16P61578 105 aa16.2■□□□□ 0.18
CLN3-250ENST00000636839 BSCL2Q96G97 398 aaPredicted RBP16.2■□□□□ 0.18
CLN3-250ENST00000636839 HARBI1Q96MB7 349 aa16.2■□□□□ 0.18
CLN3-250ENST00000636839 PIGBOS1A0A0B4J2F0 54 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 RLN2P04090 185 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 CNTFRP26992 372 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 UBE2E1P51965 193 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 PAX9P55771 341 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 RPS16P62249 146 aaKnown RBP16.19■□□□□ 0.18
CLN3-250ENST00000636839 RELBQ01201 579 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 RUSC1-AS1Q66K80 236 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 ARL6Q9H0F7 186 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.19■□□□□ 0.18
CLN3-250ENST00000636839 OR2F2O95006 317 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 PET100P0DJ07 73 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 SAA1P0DJI8 122 aaPredicted RBP16.19■□□□□ 0.18
CLN3-250ENST00000636839 IAPPP10997 89 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 LOXL1Q08397 574 aaPredicted RBP16.19■□□□□ 0.18
CLN3-250ENST00000636839 TMEM177Q53S58 311 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 PDPNQ86YL7 162 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 C7orf69Q9H7B7 122 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 COA4Q9NYJ1 87 aa16.19■□□□□ 0.18
CLN3-250ENST00000636839 SOX21Q9Y651 276 aaPredicted RBP16.19■□□□□ 0.18
CLN3-250ENST00000636839 WRBO00258 174 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 HRASP01112 189 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 IGLV2-23P01705 113 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 HKR1P10072 659 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 LGALS4P56470 323 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 DHRS7BQ6IAN0 325 aaPredicted RBP16.18■□□□□ 0.18
CLN3-250ENST00000636839 ACOT7LQ6ZUV0 252 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 INO80EQ8NBZ0 244 aaPredicted RBP16.18■□□□□ 0.18
CLN3-250ENST00000636839 OR4C13Q8NGP0 309 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 ZDHHC16Q969W1 377 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 C1orf159Q96HA4 380 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 AUP1Q9Y679 476 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 FAM24AA6NFZ4 105 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 H3BP45 60 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 RRASP10301 218 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 SAA4P35542 130 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 RAB13P51153 203 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 TNFRSF9Q07011 255 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 OPCMLQ14982 345 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 BRD3OSQ6XYD6 125 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 CIARTQ8N365 385 aaPredicted RBP16.18■□□□□ 0.18
CLN3-250ENST00000636839 MS4A7Q9GZW8 240 aaPredicted RBP16.18■□□□□ 0.18
CLN3-250ENST00000636839 RBKSQ9H477 322 aa16.18■□□□□ 0.18
CLN3-250ENST00000636839 CR1P17927 2039 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 TNCP24821 2201 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 E5RGE8 158 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 OPN1MWP04001 364 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms