RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 MINOS1-NBL1R4GNA1 71 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 SPG11Q96JI7 2443 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 ABCA2Q9BZC7 2435 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 A0A1W2PPE3 182 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 C15orf61A6NNL5 157 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 BUB1B-PAK6H3BSN5 160 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 SSSCA1O60232 199 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 IGHV3-7P01780 117 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 TPT1P13693 172 aaKnown RBP8.6□□□□□ -1.03
CLN3-248ENST00000636355 POLR2GP62487 172 aaKnown RBP eCLIP8.6□□□□□ -1.03
CLN3-248ENST00000636355 CXorf66Q5JRM2 361 aaPredicted RBP8.6□□□□□ -1.03
CLN3-248ENST00000636355 UTF1Q5T230 341 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 ZNF787Q6DD87 383 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 CCDC144NLQ6NUI1 221 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 STX12Q86Y82 276 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 Q8N7P7 452 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 ZNF680Q8NEM1 530 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 OR8H1Q8NGG4 311 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 OR4P4Q8NGL7 312 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 SMIM8Q96KF7 97 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 NABP2Q9BQ15 211 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 SIRPDQ9H106 197 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 TMEM140Q9NV12 185 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 PRNDQ9UKY0 176 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 ZNF257Q9Y2Q1 563 aa8.6□□□□□ -1.03
CLN3-248ENST00000636355 A1L4Q6 167 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 MSGN1A6NI15 193 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 JTBO76095 146 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 LGALS7P47929 136 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 SPCS3P61009 180 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 UBE2KP61086 200 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 EXOSC2Q13868 293 aaKnown RBP8.59□□□□□ -1.03
CLN3-248ENST00000636355 HABP2Q14520 560 aaPredicted RBP8.59□□□□□ -1.03
CLN3-248ENST00000636355 ZNF266Q14584 549 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 EIF5AL1Q6IS14 154 aaKnown RBP8.59□□□□□ -1.03
CLN3-248ENST00000636355 Q6ZRM9 215 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 C1orf229Q6ZS94 237 aaPredicted RBP8.59□□□□□ -1.03
CLN3-248ENST00000636355 PUSL1Q8N0Z8 303 aaKnown RBP8.59□□□□□ -1.03
CLN3-248ENST00000636355 UBAC2Q8NBM4 344 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 OR5B3Q8NH48 314 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 SCARB1Q8WTV0 552 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 ST8SIA2Q92186 375 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 RPEQ96AT9 228 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 MBD6Q96DN6 1003 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 HARBI1Q96MB7 349 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 RNF5Q99942 180 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 NARFLQ9H6Q4 476 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 ZC4H2Q9NQZ6 224 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 TMEM14BQ9NUH8 114 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 FKBP11Q9NYL4 201 aa8.59□□□□□ -1.03
CLN3-248ENST00000636355 TBL2Q9Y4P3 447 aaKnown RBP8.59□□□□□ -1.03
CLN3-248ENST00000636355 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.59□□□□□ -1.03
CLN3-248ENST00000636355 DOPEY2Q9Y3R5 2298 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 WNK2Q9Y3S1 2297 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 BORCS7-ASMTA0A0B4J1R7 106 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 LEUTXA8MZ59 168 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 LY6LH3BQJ8 138 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 SPDEFO95238 335 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 ARG1P05089 322 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 IL6RP08887 468 aaPredicted RBP8.58□□□□□ -1.04
CLN3-248ENST00000636355 USF1P22415 310 aaPredicted RBP8.58□□□□□ -1.04
CLN3-248ENST00000636355 GATA3P23771 443 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 HTR1DP28221 377 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 CAV2P51636 162 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 ATP5IP56385 69 aaPredicted RBP8.58□□□□□ -1.04
CLN3-248ENST00000636355 HBG1P69891 147 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 HBG2P69892 147 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 RELBQ01201 579 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 EWSR1Q01844 656 aaKnown RBP eCLIP8.58□□□□□ -1.04
CLN3-248ENST00000636355 OR4A47Q6IF82 309 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 OR4A16Q8NH70 328 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 LRRC20Q8TCA0 184 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 FLYWCH2Q96CP2 140 aaKnown RBP8.58□□□□□ -1.04
CLN3-248ENST00000636355 C1orf159Q96HA4 380 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 CLCC1Q96S66 551 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 ZNF471Q9BX82 626 aaPredicted RBP8.58□□□□□ -1.04
CLN3-248ENST00000636355 LPAR2Q9HBW0 351 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 DPM3Q9P2X0 92 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 FBXL17Q9UF56 701 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 CREBBPQ92793 2442 aa8.58□□□□□ -1.04
CLN3-248ENST00000636355 IGHV1-3A0A0C4DH29 117 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 SHOXO15266 292 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 CHST1O43916 411 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 RBMXL2O75526 392 aaKnown RBP8.57□□□□□ -1.04
CLN3-248ENST00000636355 DFFBO76075 338 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 KBTBD11O94819 623 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 IGKV1-16P04430 117 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 HOXB4P17483 251 aaPredicted RBP8.57□□□□□ -1.04
CLN3-248ENST00000636355 ZFP36P26651 326 aaKnown RBP8.57□□□□□ -1.04
CLN3-248ENST00000636355 SULT1A1P50225 295 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 UBE2E1P51965 193 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 RPP30P78346 268 aaKnown RBP8.57□□□□□ -1.04
CLN3-248ENST00000636355 VMA21Q3ZAQ7 101 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 TPTE2P1Q5T6R2 138 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 VMO1Q7Z5L0 202 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 BAP18Q8IXM2 172 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 PNKDQ8N490 385 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 TMEM252Q8N6L7 170 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 TMEM167AQ8TBQ9 72 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 DTD1Q8TEA8 209 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms