RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 H1FOOQ8IZA3 346 aaPredicted RBP12.23□□□□□ -0.45
CLN3-246ENST00000636228 DCUN1D5Q9BTE7 237 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 SIGLEC8Q9NYZ4 499 aa12.23□□□□□ -0.45
CLN3-246ENST00000636228 SMIM30A4D0T7 59 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 HMX3A6NHT5 357 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 IFITM5A6NNB3 132 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 PDCD5O14737 125 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 FCGR3BO75015 233 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 OR2J3O76001 311 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 HLA-AP01891 365 aaKnown RBP12.22□□□□□ -0.45
CLN3-246ENST00000636228 CD7P09564 240 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 SAA1P0DJI8 122 aaPredicted RBP12.22□□□□□ -0.45
CLN3-246ENST00000636228 RPL30P62888 115 aaKnown RBP12.22□□□□□ -0.45
CLN3-246ENST00000636228 PRSS48Q7RTY5 328 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 VKORC1L1Q8N0U8 176 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 DEFB125Q8N687 156 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 NEURL2Q9BR09 285 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 ST6GALNAC5Q9BVH7 336 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 WFDC10AQ9H1F0 79 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 PEMTQ9UBM1 199 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 CEPT1Q9Y6K0 416 aa12.22□□□□□ -0.45
CLN3-246ENST00000636228 TRBV9A0A0B4J1U6 114 aa12.21□□□□□ -0.45
CLN3-246ENST00000636228 ZNF785A8K8V0 405 aa12.21□□□□□ -0.45
CLN3-246ENST00000636228 PPP5D1E7EU14 171 aa12.21□□□□□ -0.45
CLN3-246ENST00000636228 NFYAP23511 347 aaPredicted RBP12.21□□□□□ -0.45
CLN3-246ENST00000636228 LINC00322Q6ZN03 302 aaPredicted RBP12.21□□□□□ -0.45
CLN3-246ENST00000636228 OSR1Q8TAX0 266 aaPredicted RBP12.21□□□□□ -0.45
CLN3-246ENST00000636228 ADTRPQ96IZ2 230 aa12.21□□□□□ -0.45
CLN3-246ENST00000636228 ATG5Q9H1Y0 275 aa12.21□□□□□ -0.45
CLN3-246ENST00000636228 HIPK2Q9H2X6 1198 aa12.21□□□□□ -0.45
CLN3-246ENST00000636228 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.2□□□□□ -0.46
CLN3-246ENST00000636228 TRAV1-2A0A0B4J238 106 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 FAM223BA6NKX1 122 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 TUSC2O75896 110 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 ACTL6BO94805 426 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 DIRAS3O95661 229 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 IGHV3-23P01764 117 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 RAB6AP20340 208 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 CDK10Q15131 360 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 CDNFQ49AH0 187 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 IZUMO2Q6UXV1 221 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 NR2C2APQ86WQ0 139 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 FAM223AQ8IWN6 122 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 TTC9CQ8N5M4 171 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 DMRT1Q9Y5R6 373 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 S4R3C0 116 aa12.2□□□□□ -0.46
CLN3-246ENST00000636228 RBMY1BA6NDE4 496 aaKnown RBP12.19□□□□□ -0.46
CLN3-246ENST00000636228 METTL21EPA6NDL7 271 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 RBMY1EA6NEQ0 496 aaKnown RBP12.19□□□□□ -0.46
CLN3-246ENST00000636228 E7EUB6 86 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 TPPPO94811 219 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 OR2C1O95371 312 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 RBMY1DP0C7P1 496 aaKnown RBP12.19□□□□□ -0.46
CLN3-246ENST00000636228 RAB3BP20337 219 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 MYL9P24844 172 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 RANBP1P43487 201 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 GUCA2BQ16661 112 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 DEFB114Q30KQ6 69 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 C15orf32Q32M92 178 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 C22orf42Q6IC83 251 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 MMD2Q8IY49 270 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 ZNF645Q8N7E2 425 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 OR2K2Q8NGT1 345 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 DYNLRB2Q8TF09 96 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 SPIN2AQ99865 258 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 SPIN2BQ9BPZ2 258 aa12.19□□□□□ -0.46
CLN3-246ENST00000636228 PLECQ15149 4684 aaKnown RBP12.19□□□□□ -0.46
CLN3-246ENST00000636228 IGKV1D-13A0A0B4J2D9 117 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 TEX22C9J3V5 150 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 AIREO43918 545 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 IGLV2-14P01704 120 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 IGKV1-13P0DP09 117 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 FOLR2P14207 255 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 Q6ZS49 121 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 KCTD9Q7L273 389 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 ZNF367Q7RTV3 350 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 NECAP1Q8NC96 275 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 CACNG8Q8WXS5 425 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 WDR89Q96FK6 387 aaPredicted RBP12.18□□□□□ -0.46
CLN3-246ENST00000636228 FYTTD1Q96QD9 318 aaKnown RBP12.18□□□□□ -0.46
CLN3-246ENST00000636228 GPHA2Q96T91 129 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 OR51E2Q9H255 320 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 SRD5A3Q9H8P0 318 aa12.18□□□□□ -0.46
CLN3-246ENST00000636228 RBMX2Q9Y388 322 aaKnown RBP12.18□□□□□ -0.46
CLN3-246ENST00000636228 TRDV1A0A1B0GX56 115 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 C2orf70A6NJV1 201 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 NDUFB8O95169 186 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 HLA-DQB1P01920 261 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 IL6RP08887 468 aaPredicted RBP12.17□□□□□ -0.46
CLN3-246ENST00000636228 MYOD1P15172 320 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 DTYMKP23919 212 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 HSPA13P48723 471 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 BRWD1-AS2P59051 145 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 TBCEQ15813 527 aaPredicted RBP12.17□□□□□ -0.46
CLN3-246ENST00000636228 NUDCD2Q8WVJ2 157 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 TCTEX1D2Q8WW35 142 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 CNBD2Q96M20 576 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 NDUFB11Q9NX14 153 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 SLC2A8Q9NY64 477 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 FBXL7Q9UJT9 491 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms