RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FAM90A14PP0C7W9 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A24PP0C7X0 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FOXG1P55316 489 aaPredicted RBP9.34□□□□□ -0.91
CLN3-244ENST00000636147 LINC00205P59089 165 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 SLC25A53Q5H9E4 307 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 WDR73Q6P4I2 378 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 OR2D3Q8NGH3 330 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 OCC1Q8TAD7 63 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 SGK494Q96LW2 274 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 CFHR5Q9BXR6 569 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 KIAA1549LQ6ZVL6 1849 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 A0A1W2PQM1 296 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 IGKV1D-33P01593 117 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 IGKV1-33P01594 117 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 TFF1P04155 84 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 SRFP11831 508 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 TAS2R45P59539 299 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 LINC01551Q86U37 167 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 SLC35E1Q96K37 410 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 IL36GQ9NZH8 169 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 Q8IYB0 196 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 PARD6GQ9BYG4 376 aaPredicted RBP9.33□□□□□ -0.92
CLN3-244ENST00000636147 DECR2Q9NUI1 292 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 SELENOKQ9Y6D0 94 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 TRAV24A0A0B4J272 114 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 DPRXA6NFQ7 191 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 APCSP02743 223 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 CD99P14209 185 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 PTGDSP41222 190 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 GNB1P62873 340 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 ACTL10Q5JWF8 245 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 ABLIM2Q6H8Q1 611 aa9.33□□□□□ -0.92
CLN3-244ENST00000636147 PRRC2CQ9Y520 2896 aaKnown RBP9.33□□□□□ -0.92
CLN3-244ENST00000636147 FOXI3A8MTJ6 420 aaPredicted RBP9.32□□□□□ -0.92
CLN3-244ENST00000636147 SFTPCP11686 197 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 SSTR5P35346 364 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 LYG1Q8N1E2 194 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 OR2Y1Q8NGV0 311 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 PLPPR1Q8TBJ4 325 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 LPAR2Q9HBW0 351 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 NRN1Q9NPD7 142 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 SLC45A2Q9UMX9 530 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 RNF115Q9Y4L5 304 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 CHEK1O14757 476 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 TOX3O15405 576 aaPredicted RBP9.32□□□□□ -0.92
CLN3-244ENST00000636147 MAGEA5P43359 124 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 PCOLCEQ15113 449 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 ZNF324BQ6AW86 544 aaPredicted RBP9.32□□□□□ -0.92
CLN3-244ENST00000636147 RNASEH2CQ8TDP1 164 aaKnown RBP9.32□□□□□ -0.92
CLN3-244ENST00000636147 RNF2Q99496 336 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 ZNF576Q9H609 170 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 MED13LQ71F56 2210 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 CHD7Q9P2D1 2997 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 APC2O95996 2303 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 RRHO14718 337 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 WNT9BO14905 357 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 MT-CO3P00414 261 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 MAS1LP35410 378 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 CDKN1AP38936 164 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 UBE2L3P68036 154 aaKnown RBP9.32□□□□□ -0.92
CLN3-244ENST00000636147 BLNKQ8WV28 456 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 REPIN1Q9BWE0 567 aaKnown RBP9.32□□□□□ -0.92
CLN3-244ENST00000636147 PRDM14Q9GZV8 571 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 LAMTOR2Q9Y2Q5 125 aa9.32□□□□□ -0.92
CLN3-244ENST00000636147 FAM90A26D6RGX4 464 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 LILRA1O75019 489 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 TNFSF13O75888 250 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 ZNF137PP52743 207 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 TEPPQ6URK8 271 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 MDP1Q86V88 176 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 FADS6Q8N9I5 356 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 SCCPDHQ8NBX0 429 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 CACNA1BQ00975 2339 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 OBSL1O75147 1896 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 CGAP01215 116 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 NPY1RP25929 384 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 SELENOVP59797 346 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 TDRG1Q3Y452 100 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 DNLZQ5SXM8 178 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 UNQ5815/PRO19632Q6UWF5 114 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 SLC25A40Q8TBP6 338 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 DCTN5Q9BTE1 182 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 STRADBQ9C0K7 418 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 CHRNA10Q9GZZ6 450 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 RNASE7Q9H1E1 156 aaKnown RBP9.31□□□□□ -0.92
CLN3-244ENST00000636147 RANBP2P49792 3224 aaKnown RBP9.31□□□□□ -0.92
CLN3-244ENST00000636147 CENPWQ5EE01 88 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 RIPPLY2Q5TAB7 128 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 ZNF645Q8N7E2 425 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 CORO2AQ92828 525 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 LEAP2Q969E1 77 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 NPVFQ9HCQ7 196 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 ZNF835Q9Y2P0 537 aa9.31□□□□□ -0.92
CLN3-244ENST00000636147 OOEPA6NGQ2 149 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 RAB29O14966 203 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 EPHA8P29322 1005 aaPredicted RBP9.3□□□□□ -0.92
CLN3-244ENST00000636147 SMIM21Q3B7S5 101 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 IBA57Q5T440 356 aaKnown RBP9.3□□□□□ -0.92
CLN3-244ENST00000636147 LCN12Q6JVE5 192 aa9.3□□□□□ -0.92
CLN3-244ENST00000636147 C22orf15Q8WYQ4 148 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms