RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 LRRC75BQ2VPJ9 315 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 PDPNQ86YL7 162 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 ZNF525Q8N782 197 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 ZNF383Q8NA42 475 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 OR4A5Q8NH83 315 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 ARFGEF3Q5TH69 2177 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 A0A1B0GW64 132 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 TMEM218A2RU14 115 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 C15orf61A6NNL5 157 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 MBP02144 154 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 IGHV1-8P0DP01 117 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 DLX6P56179 175 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 RAB11AP62491 216 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 RELBQ01201 579 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 ZNF616Q08AN1 781 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 TMEM267Q0VDI3 215 aaPredicted RBP13.4□□□□□ -0.26
LDB3-208ENST00000623007 NARS2Q96I59 477 aaKnown RBP13.4□□□□□ -0.26
LDB3-208ENST00000623007 LINC00052Q96N35 136 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 ENY2Q9NPA8 101 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 BET1LQ9NYM9 111 aa13.4□□□□□ -0.26
LDB3-208ENST00000623007 AMMECR1Q9Y4X0 333 aaPredicted RBP13.4□□□□□ -0.26
LDB3-208ENST00000623007 B8ZZF3 427 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 CT45A6P0DMU7 189 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 CT45A5P0DMU8 189 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 CT45A7P0DMV0 189 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 CCL3L1P16619 93 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 COL8A2P25067 703 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 TMEM182Q6ZP80 229 aaPredicted RBP13.39□□□□□ -0.27
LDB3-208ENST00000623007 CENPVQ7Z7K6 275 aaPredicted RBP13.39□□□□□ -0.27
LDB3-208ENST00000623007 SVBPQ8N300 66 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 OR5AN1Q8NGI8 311 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 OR4C13Q8NGP0 309 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 LEAP2Q969E1 77 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 RBMXL1Q96E39 390 aaKnown RBP13.39□□□□□ -0.27
LDB3-208ENST00000623007 WDR61Q9GZS3 305 aaKnown RBP13.39□□□□□ -0.27
LDB3-208ENST00000623007 TMEM133Q9H2Q1 129 aa13.39□□□□□ -0.27
LDB3-208ENST00000623007 CACNA1BQ00975 2339 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 MPDU1O75352 247 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 MMP23AO75900 390 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 OR9G9P0C7N8 305 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 GNLYP22749 145 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 HSPE1P61604 102 aaKnown RBP13.38□□□□□ -0.27
LDB3-208ENST00000623007 VWC2Q2TAL6 325 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 TUSC1Q2TAM9 212 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 OR4A47Q6IF82 309 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 BPIFCQ8NFQ6 507 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 OR13D1Q8NGV5 346 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 OR5B3Q8NH48 314 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 SEC11CQ9BY50 192 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 TMEM14BQ9NUH8 114 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 UQCC1Q9NVA1 299 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 FBXO7Q9Y3I1 522 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 SPTA1P02549 2419 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 SPENQ96T58 3664 aaKnown RBP13.38□□□□□ -0.27
LDB3-208ENST00000623007 ICE1Q9Y2F5 2266 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 USP24Q9UPU5 2620 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 BOD1L1Q8NFC6 3051 aa13.38□□□□□ -0.27
LDB3-208ENST00000623007 C17orf112F2Z3M2 114 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 IGHV3-7P01780 117 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 ARG1P05089 322 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 SNCAP37840 140 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 TMEM177Q53S58 311 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 ZNF841Q6ZN19 808 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 QTRT1Q9BXR0 403 aaKnown RBP13.37□□□□□ -0.27
LDB3-208ENST00000623007 SH3BGRL3Q9H299 93 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 TREM1Q9NP99 234 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 KCNIP2Q9NS61 270 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 USF3Q68DE3 2245 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 BSNQ9UPA5 3926 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 ARID1AO14497 2285 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 TRAV1-1A0A0B4J248 108 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 A0A1W2PPE3 182 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 RNASEK-C17orf49H0YIS7 233 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 LIPFP07098 398 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 IL6RP08887 468 aaPredicted RBP13.37□□□□□ -0.27
LDB3-208ENST00000623007 H2AFB1P0C5Y9 115 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 ERVFRD-1P60508 538 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 C10orf91Q5T1B1 145 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 THNSL2Q86YJ6 484 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 ABHD12Q8N2K0 398 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 BEND2Q8NDZ0 799 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 FAM213BQ8TBF2 198 aa13.37□□□□□ -0.27
LDB3-208ENST00000623007 TAF15Q92804 592 aaKnown RBP eCLIP13.37□□□□□ -0.27
LDB3-208ENST00000623007 FLYWCH2Q96CP2 140 aaKnown RBP13.37□□□□□ -0.27
LDB3-208ENST00000623007 UNKLQ9H9P5 680 aaKnown RBP13.37□□□□□ -0.27
LDB3-208ENST00000623007 HEYLQ9NQ87 328 aaPredicted RBP13.37□□□□□ -0.27
LDB3-208ENST00000623007 CARHSP1Q9Y2V2 147 aaKnown RBP13.37□□□□□ -0.27
LDB3-208ENST00000623007 FNDC10F2Z333 226 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 CD5P06127 495 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 IGFBP2P18065 325 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 OR2B8PP59922 312 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 SSX9Q7RTT3 188 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 TGIF2LXQ8IUE1 241 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 MRPL41Q8IXM3 137 aaKnown RBP13.36□□□□□ -0.27
LDB3-208ENST00000623007 ZNF709Q8N972 641 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 LHX4Q969G2 390 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 CLEC7AQ9BXN2 247 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 TCF19Q9Y242 345 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 WASHC3Q9Y3C0 194 aa13.36□□□□□ -0.27
LDB3-208ENST00000623007 ATMQ13315 3056 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms