RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 DNAH3Q8TD57 4116 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 DUS4LO95620 317 aaKnown RBP12.43□□□□□ -0.42
BRCA1-228ENST00000618469 PMP2P02689 132 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 SPCS2Q15005 226 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 MSMO1Q15800 293 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 TNXAQ16473 311 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 AKIRIN2Q53H80 203 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 FOXB2Q5VYV0 432 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 PYHIN1Q6K0P9 492 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF66Q6ZN08 573 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 TEX45Q8NA69 505 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 GPX8Q8TED1 209 aa12.43□□□□□ -0.42
BRCA1-228ENST00000618469 NAT1P18440 290 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 HLA-DMAP28067 261 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 HRH1P35367 487 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 RFX2P48378 723 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 TPPP2P59282 170 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 KIAA0141Q14154 515 aaPredicted RBP12.42□□□□□ -0.42
BRCA1-228ENST00000618469 PRSS8Q16651 343 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 RNASE12Q5GAN4 147 aaKnown RBP12.42□□□□□ -0.42
BRCA1-228ENST00000618469 MFSD4AQ8N468 514 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 OR11H1Q8NG94 326 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 RAB2BQ8WUD1 216 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 GIMAP1Q8WWP7 306 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 MS4A10Q96PG2 267 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 PHB2Q99623 299 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF2Q9BSG1 426 aaPredicted RBP12.42□□□□□ -0.42
BRCA1-228ENST00000618469 SCPEP1Q9HB40 452 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 EXTL2Q9UBQ6 330 aa12.42□□□□□ -0.42
BRCA1-228ENST00000618469 CREBL2O60519 120 aaPredicted RBP12.41□□□□□ -0.42
BRCA1-228ENST00000618469 NOL3O60936 208 aaKnown RBP12.41□□□□□ -0.42
BRCA1-228ENST00000618469 CD40LGP29965 261 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 KIR2DS2P43631 304 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 CATR1Q13166 79 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 DYRK1AQ13627 763 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 FHL3Q13643 280 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 MRGPRG-AS1Q2M3A8 158 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 DEFB121Q5J5C9 76 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF818PQ6ZRF7 136 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 VKORC1L1Q8N0U8 176 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 POC5Q8NA72 575 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 ZBTB34Q8NCN2 500 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 DPF1Q92782 380 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 MOB3AQ96BX8 217 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 MCRIP2Q9BUT9 160 aaKnown RBP12.41□□□□□ -0.42
BRCA1-228ENST00000618469 GPR61Q9BZJ8 451 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 FXYD6Q9H0Q3 95 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 ALX4Q9H161 411 aaPredicted RBP12.41□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF430Q9H8G1 570 aaPredicted RBP12.41□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF355PQ9NSJ1 428 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 ADAM30Q9UKF2 790 aa12.41□□□□□ -0.42
BRCA1-228ENST00000618469 I3L521 148 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 K7EIL1 84 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 SULT1C2O00338 296 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 TRGV3P03979 118 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 APELAP0DMC3 54 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 HOXD3P31249 432 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-228ENST00000618469 RCVRNP35243 200 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 BRWD1-AS2P59051 145 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 RUNX1Q01196 453 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 OR5T1Q8NG75 326 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 OR51H1Q8NH63 302 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 SRSF12Q8WXF0 261 aaKnown RBP12.4□□□□□ -0.42
BRCA1-228ENST00000618469 SLA2Q9H6Q3 261 aa12.4□□□□□ -0.42
BRCA1-228ENST00000618469 MPPED1O15442 326 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 RGS5O15539 181 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 RAMP3O60896 148 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 ACTL6BO94805 426 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 KBTBD11O94819 623 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 IGHV3-11P01762 117 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 LGALS1P09382 135 aaKnown RBP12.39□□□□□ -0.43
BRCA1-228ENST00000618469 OR8U8P0C7N1 319 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 RPL5P46777 297 aaKnown RBP12.39□□□□□ -0.43
BRCA1-228ENST00000618469 ZNF616Q08AN1 781 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 C10orf55Q5SWW7 151 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 ASPHD1Q5U4P2 390 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 AADACL3Q5VUY0 350 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 LAX1Q8IWV1 398 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 MMD2Q8IY49 270 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 SPAG16Q8N0X2 631 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 OR1N2Q8NGR9 330 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 VSTM2AQ8TAG5 236 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 BORCS5Q969J3 196 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 COA4Q9NYJ1 87 aa12.39□□□□□ -0.43
BRCA1-228ENST00000618469 H3BUA1 57 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 RLN1P04808 185 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 TMBIM6P55061 237 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 TSPAN5P62079 268 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 DEFA5Q01523 94 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 DHRS11Q6UWP2 260 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 SSX9Q7RTT3 188 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 LYSMD2Q8IV50 215 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 OR6F1Q8NGZ6 308 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 RHOVQ96L33 236 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 TMEM68Q96MH6 324 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 BCL7BQ9BQE9 202 aa12.38□□□□□ -0.43
BRCA1-228ENST00000618469 CCDC59Q9P031 241 aaKnown RBP12.38□□□□□ -0.43
BRCA1-228ENST00000618469 MSGN1A6NI15 193 aa12.37□□□□□ -0.43
BRCA1-228ENST00000618469 RBFOX2O43251 390 aaKnown RBP eCLIP12.37□□□□□ -0.43
BRCA1-228ENST00000618469 OR2A4O95047 310 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms