RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 LYL1P12980 280 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 SGCBQ16585 318 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 TSPO2Q5TGU0 170 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 IL36RNQ9UBH0 155 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 HS3ST3B1Q9Y662 390 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 AGERQ15109 404 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 KIF26BQ2KJY2 2108 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 GAGE2AQ6NT46 116 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 WDR82Q6UXN9 313 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF611Q8N823 705 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 OR8B12Q8NGG6 310 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 LRRC29Q8WV35 223 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 LRRC30A6NM36 301 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 PPYP01298 95 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 SPRYD7Q5W111 196 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 FAM19A2Q8N3H0 131 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 OR4D11Q8NGI4 311 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 DPTQ07507 201 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 C9orf153Q5TBE3 101 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 DEFB125Q8N687 156 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 HIVEP3Q5T1R4 2406 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 IGLV3-10A0A075B6K4 115 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 WISP3O95389 354 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 KCNK17Q96T54 332 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 TIAF1O95411 115 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 RPL23P62829 140 aaKnown RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 DEFB115Q30KQ5 88 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 OR5AN1Q8NGI8 311 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 MRPL27Q9P0M9 148 aaKnown RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 BOKQ9UMX3 212 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF735P0CB33 412 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF121P58317 390 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 FAM53BQ14153 422 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 HDHD3Q9BSH5 251 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 TMED7-TICAM2A0A0A6YYA0 188 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 CDC42EP2O14613 210 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 TIMP1P01033 207 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 BHLHA9Q7RTU4 235 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 BCL6BQ8N143 479 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM256Q8N2U0 113 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 OR4A5Q8NH83 315 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 WBP2Q969T9 261 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 GNB4Q9HAV0 340 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF865P0CJ78 1059 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 UCP2P55851 309 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 ALKBH4Q9NXW9 302 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 KIAA1549Q9HCM3 1950 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 MYBPHQ13203 477 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 PSG5Q15238 335 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 RBPMS2Q6ZRY4 209 aaKnown RBP4.28□□□□□ -1.72
VPS13D-213ENST00000613099 HEATR5AQ86XA9 2040 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 CST6Q15828 149 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 CDCP2Q5VXM1 449 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 PQLC2Q6ZP29 291 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 HSD11B1LQ7Z5J1 315 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 KLHDC7BQ96G42 594 aa4.28□□□□□ -1.72
VPS13D-213ENST00000613099 BVES-AS1Q5T3Y7 98 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 RND1Q92730 232 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 INSIG2Q9Y5U4 225 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 EDIL3O43854 480 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 CD52P31358 61 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 APOBEC1P41238 236 aaKnown RBP4.27□□□□□ -1.73
VPS13D-213ENST00000613099 NR0B2Q15466 257 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 EDA2RQ9HAV5 297 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 PRR13Q9NZ81 148 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 RPS16P62249 146 aaKnown RBP4.27□□□□□ -1.73
VPS13D-213ENST00000613099 PLAURQ03405 335 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 WFDC8Q8IUA0 241 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 TRBV5-4A0A0C4DH59 114 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 A0A1W2PR80 420 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 SIVA1O15304 175 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 KIAA1644Q3SXP7 199 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 GAPTQ8N292 157 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 OR5P3Q8WZ94 311 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 GPR146Q96CH1 333 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 HSD17B10Q99714 261 aaKnown RBP4.27□□□□□ -1.73
VPS13D-213ENST00000613099 TPSD1Q9BZJ3 242 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 OSTCQ9NRP0 149 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 FGF21Q9NSA1 209 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 GALR2O43603 387 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-213ENST00000613099 OPRK1P41145 380 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 C5orf64Q2M2E5 130 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 C1orf43Q9BWL3 253 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 SFXN3Q9BWM7 321 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 THSD4Q6ZMP0 1018 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 CRISPLD2Q9H0B8 497 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 NPFFR1Q9GZQ6 430 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 A0A1W2PPM0 123 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 ADM5C9JUS6 153 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 HSPE1P61604 102 aaKnown RBP4.27□□□□□ -1.73
VPS13D-213ENST00000613099 GUSBP1Q15486 140 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 S1PR3Q99500 378 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 LY96Q9Y6Y9 160 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 NCOR2Q9Y618 2525 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 MSGN1A6NI15 193 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 TNFP01375 233 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 ADCYAP1R1P41586 468 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 AICDAQ9GZX7 198 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 HRASLS2Q9NWW9 162 aa4.27□□□□□ -1.73
VPS13D-213ENST00000613099 ERG28Q9UKR5 140 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms