RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SCGB2B2Q4G0G5 96 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 HIST2H2BDQ6DRA6 164 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 SPAG16Q8N0X2 631 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 CLCC1Q96S66 551 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 PSMB11A5LHX3 300 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 DISC1C4P0D8 188 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 RBFOX2O43251 390 aaKnown RBP eCLIP13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 FBXO24O75426 580 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 CD28P10747 220 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 UBE2KP61086 200 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 NDPQ00604 133 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 VMA21Q3ZAQ7 101 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 PHLDA2Q53GA4 152 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 ZNF329Q86UD4 541 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 PPP1R27Q86WC6 154 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 POC5Q8NA72 575 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 MRGPRFQ96AM1 343 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 ZNF580Q9UK33 172 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 ATP6V0E1O15342 81 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 PTTG1O95997 202 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 CA2P00918 260 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 SAA1P0DJI8 122 aaPredicted RBP13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 PJVKQ0ZLH3 352 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 KLF9Q13886 244 aaPredicted RBP13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 ZNF562Q6V9R5 426 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 IDO2Q6ZQW0 420 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 TEX45Q8NA69 505 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 PARP11Q9NR21 331 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 SLC2A9Q9NRM0 540 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 FBXO7Q9Y3I1 522 aa13.02□□□□□ -0.33
CCDC28A-202ENST00000611852 PGAM2P15259 253 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 S100GP29377 79 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 SSBP2P81877 361 aaPredicted RBP13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 MRGPRG-AS1Q2M3A8 158 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 TCTEX1D4Q5JR98 221 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 VKORC1L1Q8N0U8 176 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 CENPSQ8N2Z9 138 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 TOMM5Q8N4H5 51 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 OR51S1Q8NGJ8 323 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 CD300LFQ8TDQ1 290 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 ZNF486Q96H40 463 aaPredicted RBP13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 PRRT1Q99946 306 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 GON7Q9BXV9 100 aa13.01□□□□□ -0.33
CCDC28A-202ENST00000611852 TNCP24821 2201 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 HPRT1P00492 218 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 PI3P19957 117 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 F2RP25116 425 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 AP3S2P59780 193 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 SLC35B1P78383 322 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 CD83Q01151 205 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 CFHR3Q02985 330 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 TBC1D26Q86UD7 250 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 OR4X2Q8NGF9 303 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 OR13C8Q8NGS7 320 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 MARCH1Q8TCQ1 289 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 RHOVQ96L33 236 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 CITED2Q99967 270 aaPredicted RBP13□□□□□ -0.33
CCDC28A-202ENST00000611852 SLC2A8Q9NY64 477 aa13□□□□□ -0.33
CCDC28A-202ENST00000611852 G3V318 75 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 ARPC1BO15143 372 aaKnown RBP12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 HRASP01112 189 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 EGR2P11161 476 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 ECI1P42126 302 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 CRIP2P52943 208 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 RND3P61587 244 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 ASAH1Q13510 395 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 OXA1LQ15070 435 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 PRSS8Q16651 343 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 ZFAND1Q8TCF1 268 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 PLEKHA2Q9HB19 425 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 HRASLSQ9HDD0 168 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 MCUBQ9NWR8 336 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 TBC1D24Q9ULP9 559 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 WSB1Q9Y6I7 421 aa12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 TET2Q6N021 2002 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-202ENST00000611852 VDAC1P21796 283 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 FAUP35544 74 aaKnown RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 PIGPP57054 158 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 TAS2R31P59538 309 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 FXYD3Q14802 87 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 SURF2Q15527 256 aaPredicted RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 ZNF585BQ52M93 769 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 ZNF57Q68EA5 555 aaPredicted RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 PUSL1Q8N0Z8 303 aaKnown RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 TCTEX1D1Q8N7M0 179 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 SGMS2Q8NHU3 365 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 VSTM2AQ8TAG5 236 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 DEDD2Q8WXF8 326 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 ARPC1AQ92747 370 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 FAM103A1Q9BTL3 118 aaKnown RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 SCP2D1Q9UJQ7 156 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 NUBP2Q9Y5Y2 271 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 TRAV41A0A0B4J266 112 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 MPPED1O15442 326 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 KBTBD11O94819 623 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 OR2A4O95047 310 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 S1PR2O95136 353 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 CNIH1O95406 144 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 CTSDP07339 412 aaPredicted RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 PPIFP30405 207 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms