RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LOC102724200A0A096LPH7 203 aaPredicted RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 TRAV25A0A0B4J276 109 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 RBMY1BA6NDE4 496 aaKnown RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 RBMY1EA6NEQ0 496 aaKnown RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 M0R1X1 148 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 LGALS9O00182 355 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 CYB5BO43169 146 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 SLC22A5O76082 557 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 IGKV1-16P04430 117 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 RBMY1DP0C7P1 496 aaKnown RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 CD36P16671 472 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 SRMP19623 302 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 PSMB9P28065 219 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 HTR2CP28335 458 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 BMI1P35226 326 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 KIR2DS2P43631 304 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 PSMD7P51665 324 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 APOC4P55056 127 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 RPS11P62280 158 aaKnown RBP eCLIP4.76□□□□□ -1.656e-6■■■■■ 44.3
CUX1-220ENST00000607092 DYRK1AQ13627 763 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 EXOSC2Q13868 293 aaKnown RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 ARL6IP1Q15041 203 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 SPHARQ15513 63 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 GUCA2BQ16661 112 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 CD300EQ496F6 205 aaPredicted RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 FAM106AQ4KMX7 169 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 C1orf100Q5SVJ3 147 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 LCE2AQ5TA79 106 aaPredicted RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 OR2G6Q5TZ20 316 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 Q6ZWC4 215 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 C6orf201Q7Z4U5 140 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 MMD2Q8IY49 270 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 SLC38A6Q8IZM9 456 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 ADAD2Q8NCV1 583 aaKnown RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 OR56B1Q8NGI3 324 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 OR4A4PQ8NGN8 299 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 VSTM2AQ8TAG5 236 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 OSR1Q8TAX0 266 aaPredicted RBP4.76□□□□□ -1.65
CUX1-220ENST00000607092 PGLYRP3Q96LB9 341 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 MGLLQ99685 303 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 MND1Q9BWT6 205 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 PLGRKTQ9HBL7 147 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 AASSQ9UDR5 926 aa4.76□□□□□ -1.65
CUX1-220ENST00000607092 HECTD4Q9Y4D8 3996 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 MSGN1A6NI15 193 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 TRDCB7Z8K6 153 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 MYOD1P15172 320 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 HIST1H1BP16401 226 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 CELP19835 753 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 GALP22466 123 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 PSMA1P25786 263 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 WNT4P56705 351 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 TCTAP57738 103 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 UBE2KP61086 200 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 RHOGP84095 191 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 TNFRSF9Q07011 255 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 MLLT11Q13015 90 aaPredicted RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 P2RY14Q15391 338 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 MED22Q15528 200 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 TNXAQ16473 311 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 PRSS8Q16651 343 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 DEFB114Q30KQ6 69 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 ZNF57Q68EA5 555 aaPredicted RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 CEMP1Q6PRD7 247 aaPredicted RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 GPHB5Q86YW7 130 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 WFDC3Q8IUB2 231 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 DEFB125Q8N687 156 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 ZNF383Q8NA42 475 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 DRAXINQ8NBI3 349 aaPredicted RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 OR52B4Q8NGK2 314 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 OR13C5Q8NGS8 318 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 OR10J5Q8NHC4 309 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 SRSF12Q8WXF0 261 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 S100ZQ8WXG8 99 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 ACOT12Q8WYK0 555 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 ORAI1Q96D31 301 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 CMSS1Q9BQ75 279 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 AIFM2Q9BRQ8 373 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 C6orf62Q9GZU0 229 aaPredicted RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 Q9N2K0 584 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 RDH8Q9NYR8 311 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 ZNF257Q9Y2Q1 563 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 MRPS7Q9Y2R9 242 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 PRELID3BQ9Y3B1 194 aa4.75□□□□□ -1.65
CUX1-220ENST00000607092 RBM7Q9Y580 266 aaKnown RBP4.75□□□□□ -1.65
CUX1-220ENST00000607092 TRBV9A0A0B4J1U6 114 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 KIR2DL5BA0A0G2JN68 375 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 KIR2DL5BA0A0G2JPC4 375 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 A0A1W2PPK0 400 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 C2orf70A6NJV1 201 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 ZNF785A8K8V0 405 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 A8MWP6 167 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 BMPR1BO00238 502 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 ARL6IP5O75915 188 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 LALBAP00709 142 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 CRYGBP07316 175 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 CD7P09564 240 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 CD3GP09693 182 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 FOLR2P14207 255 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms