RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ATOH7Q8N100 152 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 MRPL18Q9H0U6 180 aaKnown RBP15.35■□□□□ 0.05
UPF1-210ENST00000600689 IGHEP01854 428 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 TYMSP04818 313 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 WNT2P09544 360 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 GABRA2P47869 451 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 DCAF10Q5QP82 559 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 Q6P435 159 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 SAXO1Q8IYX7 474 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 HSPB7Q9UBY9 170 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 A0A1W2PNU3 283 aaPredicted RBP15.35■□□□□ 0.05
UPF1-210ENST00000600689 TPPP2P59282 170 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 SRSF7Q16629 238 aaKnown RBP eCLIP15.35■□□□□ 0.05
UPF1-210ENST00000600689 OR10G8Q8NGN5 311 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 DCTN5Q9BTE1 182 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 QTRT1Q9BXR0 403 aaKnown RBP15.35■□□□□ 0.05
UPF1-210ENST00000600689 OR2J1Q9GZK6 312 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.34■□□□□ 0.05
UPF1-210ENST00000600689 PSPNO60542 156 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 MMDQ15546 238 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 WDR86Q86TI4 376 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 FOXJ2Q9P0K8 574 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 PDLIM3Q53GG5 364 aaPredicted RBP15.34■□□□□ 0.05
UPF1-210ENST00000600689 KRTCAP3Q53RY4 240 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 SCCPDHQ8NBX0 429 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 OR1L6Q8NGR2 347 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 TIMM9Q9Y5J7 89 aa15.34■□□□□ 0.05
UPF1-210ENST00000600689 ICE1Q9Y2F5 2266 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 PMS2P5A8MQ11 134 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 SNURFLB1AK76 121 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 SH2D1BO14796 132 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 ACTL6BO94805 426 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 LCN2P80188 198 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 OR5AU1Q8NGC0 362 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 NINJ1Q92982 152 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 POM121L2Q96KW2 1035 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 KCNIP1Q9NZI2 227 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 PSG11Q9UQ72 335 aa15.33■□□□□ 0.05
UPF1-210ENST00000600689 C9orf172C9J069 976 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 C17orf112F2Z3M2 114 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 RRHO14718 337 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 MLNRO43193 412 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 VENTXO95231 258 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 CELA3BP08861 270 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 BRS3P32247 399 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 SSTR5P35346 364 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 LINC00310P59036 64 aa15.33■□□□□ 0.04
UPF1-210ENST00000600689 CD1BP29016 333 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 TPTE2P1Q5T6R2 138 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 SPATA31B1PQ5VZV4 182 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 C11orf42Q8N5U0 333 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 C12orf77C9JDV5 145 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 SIAH2O43255 324 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 CLDN14O95500 239 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 CYB561P49447 251 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 BRWD1-AS2P59051 145 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 FXYD3Q14802 87 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 ZNF497Q6ZNH5 498 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 TMEM144Q7Z5S9 345 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 APH1AQ96BI3 265 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 MIEN1Q9BRT3 115 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 LAMA5O15230 3695 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 LINC00473A8K010 186 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 EDDM3AQ14507 147 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 SSPNQ14714 243 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 ACSF3Q4G176 576 aaPredicted RBP15.32■□□□□ 0.04
UPF1-210ENST00000600689 OR8I2Q8N0Y5 310 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 ABHD12Q8N2K0 398 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 GALMQ96C23 342 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 R3HDM4Q96D70 268 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 WNT10AQ9GZT5 417 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 OPN3Q9H1Y3 402 aaPredicted RBP15.32■□□□□ 0.04
UPF1-210ENST00000600689 HEYLQ9NQ87 328 aaPredicted RBP15.32■□□□□ 0.04
UPF1-210ENST00000600689 FZR1Q9UM11 496 aa15.32■□□□□ 0.04
UPF1-210ENST00000600689 DSPP15924 2871 aaKnown RBP15.32■□□□□ 0.04
UPF1-210ENST00000600689 SFTPCP11686 197 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 TMEM183BQ1AE95 376 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 HINT2Q9BX68 163 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 MAGEA5P43359 124 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 ALKBH2Q6NS38 261 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 STRADBQ9C0K7 418 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 MED13Q9UHV7 2174 aa15.31■□□□□ 0.04
UPF1-210ENST00000600689 RNF212BA8MTL3 300 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 J3QT63 122 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 DNPH1O43598 174 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 FOXH1O75593 365 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 HBZP02008 142 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 NTF3P20783 257 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 TIMP3P35625 211 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 LINC00696Q6ZRV3 163 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 FBXL7Q9UJT9 491 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 YTHDF2Q9Y5A9 579 aaKnown RBP15.3■□□□□ 0.04
UPF1-210ENST00000600689 PDE6DO43924 150 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 FCGR3BO75015 233 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 NEURL1O76050 574 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 RPL31P62899 125 aaKnown RBP15.3■□□□□ 0.04
UPF1-210ENST00000600689 ATP6V1FQ16864 119 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 FAM19A2Q8N3H0 131 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 ZNF645Q8N7E2 425 aa15.3■□□□□ 0.04
UPF1-210ENST00000600689 C15orf62A8K5M9 175 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms