RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TOMM40LQ969M1 308 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 CREB3L1Q96BA8 519 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 ZNF486Q96H40 463 aaPredicted RBP10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 SCGB3A2Q96PL1 93 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 RTBDNQ9BSG5 229 aaPredicted RBP10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 SDHAF2Q9NX18 166 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 COPZ2Q9P299 210 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 DPM3Q9P2X0 92 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 ZNF221Q9UK13 617 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 VSIG4Q9Y279 399 aa10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 AMMECR1Q9Y4X0 333 aaPredicted RBP10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 RBM7Q9Y580 266 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-218ENST00000598907 FRAS1Q86XX4 4008 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 VGLL3A8MV65 326 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 NUDT19A8MXV4 375 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 LEUTXA8MZ59 168 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 GPR31O00270 319 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 GPR12P47775 334 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 RND3P61587 244 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 ZNF816Q0VGE8 651 aaPredicted RBP10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 DIAPH2-AS1Q14236 149 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 C8orf86Q6ZUL3 223 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 ZFAND1Q8TCF1 268 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 CITED4Q96RK1 184 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 C5orf66Q9H5L9 145 aa10.94□□□□□ -0.66
SHKBP1-218ENST00000598907 OOSP1A8MZH6 123 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 HSD17B6O14756 317 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 LY86O95711 162 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 PGAM2P15259 253 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 SPNP16150 400 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 IL3RAP26951 378 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 MECP2P51608 486 aaKnown RBP10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 SSX2Q16385 188 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 RGS21Q2M5E4 152 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 RPL39P5Q59GN2 51 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 TPTE2P1Q5T6R2 138 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 C18orf65Q6ZTR6 163 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 RTN4IP1Q8WWV3 396 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 MALSU1Q96EH3 234 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 DUX3Q96PT4 197 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 S1PR3Q99500 378 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 NUBP2Q9Y5Y2 271 aa10.93□□□□□ -0.66
SHKBP1-218ENST00000598907 PGLYRP1O75594 196 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 GAPDHP04406 335 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 CT45A6P0DMU7 189 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 CT45A5P0DMU8 189 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 CT45A7P0DMV0 189 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 PI3P19957 117 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 DUTP33316 252 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 CEACAM3P40198 252 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 DHODHQ02127 395 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 OXA1LQ15070 435 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 ZNF66Q6ZN08 573 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 ENKURQ8TC29 256 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 TMEM230Q96A57 120 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 MARVELD1Q9BSK0 173 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 ALX4Q9H161 411 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 C20orf85Q9H1P6 137 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 SLC2A9Q9NRM0 540 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 FLVCR2Q9UPI3 526 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 SMAD5-AS1Q9Y6J3 95 aa10.92□□□□□ -0.66
SHKBP1-218ENST00000598907 A0A1W2PPI3 338 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 SH2D7A6NKC9 451 aaPredicted RBP10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 TXNL1O43396 289 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 PIGPP57054 158 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 RPL30P62888 115 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 SLC25A42Q86VD7 318 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 CMTM1Q8IZ96 169 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 ADAD2Q8NCV1 583 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 CHPT1Q8WUD6 406 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 DDB2Q92466 427 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 HSD17B10Q99714 261 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 NABP2Q9BQ15 211 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 ZMAT4Q9H898 229 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 NUDT15Q9NV35 164 aa10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 C14orf166Q9Y224 244 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-218ENST00000598907 IGHV1-3A0A0C4DH29 117 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 CRYM-AS1A6NIL9 109 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 LINC00473A8K010 186 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 M0R1X1 148 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 ARPC1BO15143 372 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 MPPED1O15442 326 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 H2AFB2P0C5Z0 115 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 BRWD1-AS2P59051 145 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 LINC00205P59089 165 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 PHLDA2Q53GA4 152 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 PLET1Q6UQ28 207 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 KCTD9Q7L273 389 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 TGIF2LXQ8IUE1 241 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 OR8H3Q8N146 312 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 CENPSQ8N2Z9 138 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 ZNF383Q8NA42 475 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 OR5AN1Q8NGI8 311 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 RPEQ96AT9 228 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 ADTRPQ96IZ2 230 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 GPHA2Q96T91 129 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 MRPL20Q9BYC9 149 aaKnown RBP10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 HILPDAQ9Y5L2 63 aa10.9□□□□□ -0.66
SHKBP1-218ENST00000598907 TRAV6A0A075B6T7 132 aa10.89□□□□□ -0.67
SHKBP1-218ENST00000598907 TNFSF12O43508 249 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms