RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SRSF4Q08170 494 aaKnown RBP12.45□□□□□ -0.42
UPF1-206ENST00000598471 HABP2Q14520 560 aaPredicted RBP12.45□□□□□ -0.42
UPF1-206ENST00000598471 POU2AF1Q16633 256 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 KLF17Q5JT82 389 aaPredicted RBP12.45□□□□□ -0.42
UPF1-206ENST00000598471 ZBTB8BQ8NAP8 495 aaPredicted RBP12.45□□□□□ -0.42
UPF1-206ENST00000598471 VSTM2AQ8TAG5 236 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 CFHR4Q92496 578 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 GPR146Q96CH1 333 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 RHOVQ96L33 236 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 OR2A7Q96R45 310 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 TSNAXQ99598 290 aaKnown RBP12.45□□□□□ -0.42
UPF1-206ENST00000598471 RNF5Q99942 180 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 NMES1Q9C002 83 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 RANGRFQ9HD47 186 aaPredicted RBP12.45□□□□□ -0.42
UPF1-206ENST00000598471 GSKIPQ9P0R6 139 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 OTOGQ6ZRI0 2925 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 ZNF469Q96JG9 3925 aaPredicted RBP12.44□□□□□ -0.42
UPF1-206ENST00000598471 ITPR3Q14573 2671 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 FAM90A9PA6NNJ1 464 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 SMCO1Q147U7 214 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 VMA21Q3ZAQ7 101 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 SSX9Q7RTT3 188 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 LURAP1LQ8IV03 231 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 TCTE3Q8IZS6 198 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 DYNAPQ8N1N2 210 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 OR2T10Q8NGZ9 312 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 OR1S1Q8NH92 325 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 C17orf50Q8WW18 174 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 ST6GAL2Q96JF0 529 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 OR10C1Q96KK4 312 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 ZFP57Q9NU63 452 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 TMEM140Q9NV12 185 aa12.44□□□□□ -0.42
UPF1-206ENST00000598471 A0A0U1RQK1 487 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 MPTX1A8MV57 137 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 RBMXL2O75526 392 aaKnown RBP12.43□□□□□ -0.42
UPF1-206ENST00000598471 SNAPC5O75971 98 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 MOSP00540 346 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 FSHBP01225 129 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 IGKV1D-33P01593 117 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 IGKV1-33P01594 117 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 FAM106CPP0CH98 169 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 HNF1AP20823 631 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 FGL1Q08830 312 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 HES1Q14469 280 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 PPP1R14BQ96C90 147 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 AJUBAQ96IF1 538 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 COA4Q9NYJ1 87 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 CACNG5Q9UF02 275 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 CACFD1Q9UGQ2 172 aa12.43□□□□□ -0.42
UPF1-206ENST00000598471 A0A0G2JRQ6 117 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 SPDEFO95238 335 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 SNRNP70P08621 437 aaKnown RBP12.42□□□□□ -0.42
UPF1-206ENST00000598471 P0C879 139 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 PET100P0DJ07 73 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 DYNLT3P51808 116 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 UBE2KP61086 200 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 OR4A47Q6IF82 309 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 THNSL2Q86YJ6 484 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 VKORC1L1Q8N0U8 176 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 OR2T35Q8NGX2 323 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 OR4A16Q8NH70 328 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 OR4A5Q8NH83 315 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 FYTTD1Q96QD9 318 aaKnown RBP12.42□□□□□ -0.42
UPF1-206ENST00000598471 SMR3AQ99954 134 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 MEGF9Q9H1U4 602 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 GSX1Q9H4S2 264 aaPredicted RBP12.42□□□□□ -0.42
UPF1-206ENST00000598471 YAE1D1Q9NRH1 226 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.42□□□□□ -0.42
UPF1-206ENST00000598471 BET1LQ9NYM9 111 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 KIAA1456Q9P272 454 aa12.42□□□□□ -0.42
UPF1-206ENST00000598471 MAP1AP78559 2803 aaPredicted RBP12.42□□□□□ -0.42
UPF1-206ENST00000598471 SCGB1D2O95969 90 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 SAA1P0DJI8 122 aaPredicted RBP12.41□□□□□ -0.42
UPF1-206ENST00000598471 TMEM11P17152 192 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 KRTAP1-1Q07627 177 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 AANATQ16613 207 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 LRRC75BQ2VPJ9 315 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 C9orf139Q6ZV77 190 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 OR4D5Q8NGN0 318 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 PPP1R1CQ8WVI7 109 aa12.41□□□□□ -0.42
UPF1-206ENST00000598471 EAF1Q96JC9 268 aaPredicted RBP12.41□□□□□ -0.42
UPF1-206ENST00000598471 FAM90A26D6RGX4 464 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 WRBO00258 174 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 RLN2P04090 185 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 FOSL1P15407 271 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 PAX6P26367 422 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 PSMB6P28072 239 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 SRP14P37108 136 aaKnown RBP12.4□□□□□ -0.42
UPF1-206ENST00000598471 NKX2-1P43699 371 aaPredicted RBP12.4□□□□□ -0.42
UPF1-206ENST00000598471 S100A10P60903 97 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 EBI3Q14213 229 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 MMDQ15546 238 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 ZFP69Q49AA0 526 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 FOXRED2Q8IWF2 684 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 PUSL1Q8N0Z8 303 aaKnown RBP12.4□□□□□ -0.42
UPF1-206ENST00000598471 TEX45Q8NA69 505 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 OR8H1Q8NGG4 311 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 C1RLQ9NZP8 487 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 PRNDQ9UKY0 176 aa12.4□□□□□ -0.42
UPF1-206ENST00000598471 SRRM4A7MD48 611 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms