RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PRSS8Q16651 343 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 MRGPRG-AS1Q2M3A8 158 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 OR2B11Q5JQS5 317 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 MFSD4AQ8N468 514 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 OR11H1Q8NG94 326 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 OR5H2Q8NGV7 314 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 BORCS5Q969J3 196 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 DCUN1D5Q9BTE7 237 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 SLC5A7Q9GZV3 580 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 SCPEP1Q9HB40 452 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 CCL28Q9NRJ3 127 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 AURKAIP1Q9NWT8 199 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-206ENST00000595974 OR8U8P0C7N1 319 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 ELK1P19419 428 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 TPPP2P59282 170 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 ZNF616Q08AN1 781 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 EGFEM1PQ0D2K5 195 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 DYRK1AQ13627 763 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 TNXAQ16473 311 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 IDO2Q6ZQW0 420 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 TMEM17Q86X19 198 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 POC5Q8NA72 575 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 VSTM2AQ8TAG5 236 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 GPX8Q8TED1 209 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 ADAM30Q9UKF2 790 aa12.58□□□□□ -0.4
TRIM28-206ENST00000595974 ACTL6BO94805 426 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 LGALS1P09382 135 aaKnown RBP12.57□□□□□ -0.4
TRIM28-206ENST00000595974 CATR1Q13166 79 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 DHRS11Q6UWP2 260 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 SNX29P2Q8IUI4 249 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 MMD2Q8IY49 270 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 OR1N2Q8NGR9 330 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 CASTOR1Q8WTX7 329 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 SRSF12Q8WXF0 261 aaKnown RBP12.57□□□□□ -0.4
TRIM28-206ENST00000595974 OR5B12Q96R08 314 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 BCL7BQ9BQE9 202 aa12.57□□□□□ -0.4
TRIM28-206ENST00000595974 ZNF430Q9H8G1 570 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-206ENST00000595974 FAM25AB3EWG3 89 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 FAM25CB3EWG5 89 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 FAM25GB3EWG6 89 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 SULT1C2O00338 296 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 RBFOX2O43251 390 aaKnown RBP eCLIP12.56□□□□□ -0.4
TRIM28-206ENST00000595974 TNFSF12O43508 249 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 BRI3O95415 125 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 PMP2P02689 132 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 TRGV3P03979 118 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 RCVRNP35243 200 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 RFX2P48378 723 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 BRWD1-AS2P59051 145 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 ASPHD1Q5U4P2 390 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 ZNF818PQ6ZRF7 136 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 RAB2BQ8WUD1 216 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 MOB3AQ96BX8 217 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 MS4A10Q96PG2 267 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 PHB2Q99623 299 aa12.56□□□□□ -0.4
TRIM28-206ENST00000595974 ZNF2Q9BSG1 426 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-206ENST00000595974 TPPPO94811 219 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 KBTBD11O94819 623 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 OR2A4O95047 310 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 HRASP01112 189 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 HOXD3P31249 432 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-206ENST00000595974 HRH1P35367 487 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 C9orf66Q5T8R8 295 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 CLVS1Q8IUQ0 354 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-206ENST00000595974 SPAG16Q8N0X2 631 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 PUSL1Q8N0Z8 303 aaKnown RBP12.55□□□□□ -0.4
TRIM28-206ENST00000595974 MRAPQ8TCY5 172 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 RHOVQ96L33 236 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 OR2A7Q96R45 310 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 GPHA2Q96T91 129 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 SPIN2AQ99865 258 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 SPIN2BQ9BPZ2 258 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 AIFM2Q9BRQ8 373 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 ZNF355PQ9NSJ1 428 aa12.55□□□□□ -0.4
TRIM28-206ENST00000595974 ZMAT5Q9UDW3 170 aaKnown RBP12.55□□□□□ -0.4
TRIM28-206ENST00000595974 A0A0G2JLM5 398 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 MSGN1A6NI15 193 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 LINC01619G3V211 115 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 HLA-DMAP28067 261 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 GNRHRP30968 328 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 TMBIM6P55061 237 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 SPCS2Q15005 226 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 AADACL3Q5VUY0 350 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 LYSMD2Q8IV50 215 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 VKORC1L1Q8N0U8 176 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 OR5T1Q8NG75 326 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 OR6F1Q8NGZ6 308 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 TMEM167AQ8TBQ9 72 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 CD300LFQ8TDQ1 290 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 TINAGL1Q9GZM7 467 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-206ENST00000595974 FXYD6Q9H0Q3 95 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 ALX4Q9H161 411 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-206ENST00000595974 EXTL2Q9UBQ6 330 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 SORL1Q92673 2214 aa12.54□□□□□ -0.4
TRIM28-206ENST00000595974 SEC14L6B5MCN3 397 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 MPPED1O15442 326 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 RAMP3O60896 148 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 IGHV3-11P01762 117 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 OR9G9P0C7N8 305 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 MAS1LP35410 378 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms