RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 SH2D2AQ9NP31 389 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 IGHV3-15A0A0B4J1V0 119 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 IGKV1-9A0A0C4DH69 117 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 TIMP3P35625 211 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 AAED1Q7RTV5 226 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 OR2M3Q8NG83 312 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 SIGLEC12Q96PQ1 595 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 CLEC7AQ9BXN2 247 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 TMEM167BQ9NRX6 74 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 HILPDAQ9Y5L2 63 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 ZFAND5O76080 213 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 GCSHP23434 173 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 ZNF788Q6ZQV5 615 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 SVIPQ8NHG7 77 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 RASL10BQ96S79 203 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 PMCHL2Q9BQD1 86 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 TNFSF14O43557 240 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 TNFSF15O95150 251 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 CA1P00915 261 aaPredicted RBP10.48□□□□□ -0.73
LIG1-207ENST00000594759 HBZP02008 142 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 IGHV4-34P06331 123 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 ADH4P08319 380 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 G6PCP35575 357 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 NMUP48645 174 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 CLDN18P56856 261 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 RBM11P57052 281 aaKnown RBP10.48□□□□□ -0.73
LIG1-207ENST00000594759 HIST1H1AQ02539 215 aaPredicted RBP10.48□□□□□ -0.73
LIG1-207ENST00000594759 PRDX4Q13162 271 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 RTL8BQ17RB0 113 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 FAM71F2Q6NXP2 309 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 RNF166Q96A37 237 aaPredicted RBP10.48□□□□□ -0.73
LIG1-207ENST00000594759 A0A0U1RQV5 110 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 MS4A18H0YCH9 400 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 MMP23AO75900 390 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 CTSBP07858 339 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 SELENOVP59797 346 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 Q0VG73 95 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 MS4A18Q3C1V0 323 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 KRTCAP3Q53RY4 240 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 OR8A1Q8NGG7 326 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 GNG12Q9UBI6 72 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 MYO7BQ6PIF6 2116 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 IGHV2-26A0A0B4J1V2 119 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 SCGB2A1O75556 95 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 OR5A1Q8NGJ0 315 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 OR1F12Q8NHA8 337 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 A0A087X0K7 114 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 SAP30O75446 220 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 P04436 131 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 GNB1P62873 340 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 FGFRL1Q8N441 504 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 CPT1CQ8TCG5 803 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 IL36RNQ9UBH0 155 aa10.48□□□□□ -0.73
LIG1-207ENST00000594759 LIPT2A6NK58 231 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 SPINK2P20155 84 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 CRYBB3P26998 211 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 ZNF137PP52743 207 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 FOXA3P55318 350 aaPredicted RBP10.47□□□□□ -0.73
LIG1-207ENST00000594759 SEC11AP67812 179 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 SCCPDHQ8NBX0 429 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 ATP6V0BQ99437 205 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 SSBP3Q9BWW4 388 aaPredicted RBP10.47□□□□□ -0.73
LIG1-207ENST00000594759 ROS1P08922 2347 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 THSD7BQ9C0I4 1608 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 A0A1W2PS18 150 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 PAX1P15863 534 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 TMEM97Q5BJF2 176 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 SLC22A18ASQ8N1D0 253 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 KCNE4Q8WWG9 221 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 SPSB4Q96A44 273 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 ZNF48Q96MX3 618 aaPredicted RBP10.47□□□□□ -0.73
LIG1-207ENST00000594759 NPCDR1Q9BY65 106 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 CRIM1Q9NZV1 1036 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 C5orf49A4QMS7 147 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 TOMM40O96008 361 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 PATE4P0C8F1 98 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 ZP4Q12836 540 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 CENPWQ5EE01 88 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 GUSBP11Q6P575 273 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 C16orf54Q6UWD8 224 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 ZNF257Q9Y2Q1 563 aa10.47□□□□□ -0.73
LIG1-207ENST00000594759 SERTM2A0A1B0GWG4 89 aa10.46□□□□□ -0.73
LIG1-207ENST00000594759 ARR3P36575 388 aa10.46□□□□□ -0.73
LIG1-207ENST00000594759 FOLR3P41439 243 aa10.46□□□□□ -0.73
LIG1-207ENST00000594759 YPEL3P61236 119 aaPredicted RBP10.46□□□□□ -0.73
LIG1-207ENST00000594759 LSM10Q969L4 123 aaKnown RBP10.46□□□□□ -0.73
LIG1-207ENST00000594759 KLHDC3Q9BQ90 382 aa10.46□□□□□ -0.73
LIG1-207ENST00000594759 NOTCH4Q99466 2003 aa10.46□□□□□ -0.73
LIG1-207ENST00000594759 A1L4Q6 167 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 FAM87AP0C7U9 286 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 LINC00271P0C7V0 271 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 B4GALT1P15291 398 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 BCL3P20749 454 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 RBPJQ06330 500 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 TFF3Q07654 80 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 MIC13Q5XKP0 118 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 C5orf30Q96GV9 206 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 NLRC5Q86WI3 1866 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 IGHV3-64DA0A0J9YX35 117 aa10.46□□□□□ -0.74
LIG1-207ENST00000594759 IGLC7A0M8Q6 106 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms