RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SLC35D1Q9NTN3 355 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 NUP50Q9UKX7 468 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 hCG_1809904A0A1W2PP81 198 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 A0A1W2PPE2 198 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 A0A1W2PR64 198 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 A0A1W2PRV1 198 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 LYNX1G3V0Z9 82 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 J3QR06 171 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 GOSR1O95249 250 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 TSPAN15O95858 294 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 CT45A6P0DMU7 189 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 CT45A5P0DMU8 189 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 CT45A7P0DMV0 189 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 IGHV1-8P0DP01 117 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 LYNX1P0DP58 116 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 IL3RAP26951 378 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 ZNF137PP52743 207 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 RELBQ01201 579 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 SLC38A11Q08AI6 406 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 ZNF841Q6ZN19 808 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 TMEM182Q6ZP80 229 aaPredicted RBP11.61□□□□□ -0.55
LIG3-205ENST00000585941 C8orf46Q8TAG6 207 aa11.61□□□□□ -0.55
LIG3-205ENST00000585941 OSR1Q8TAX0 266 aaPredicted RBP11.61□□□□□ -0.55
LIG3-205ENST00000585941 QTRT1Q9BXR0 403 aaKnown RBP11.61□□□□□ -0.55
LIG3-205ENST00000585941 PPIHO43447 177 aaKnown RBP11.6□□□□□ -0.55
LIG3-205ENST00000585941 SOD3P08294 240 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 SSX9Q7RTT3 188 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 PUSL1Q8N0Z8 303 aaKnown RBP11.6□□□□□ -0.55
LIG3-205ENST00000585941 LFNGQ8NES3 379 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 BPIFCQ8NFQ6 507 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 OR10P1Q8NGE3 313 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 PSMG3Q9BT73 122 aaPredicted RBP11.6□□□□□ -0.55
LIG3-205ENST00000585941 HIPK2Q9H2X6 1198 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 CHODLQ9H9P2 273 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 FOXA2Q9Y261 457 aaPredicted RBP11.6□□□□□ -0.55
LIG3-205ENST00000585941 ACACBO00763 2458 aa11.6□□□□□ -0.55
LIG3-205ENST00000585941 C15orf61A6NNL5 157 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 GNB2P62879 340 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 ZNF616Q08AN1 781 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 TUSC1Q2TAM9 212 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 LRRC75BQ2VPJ9 315 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 AKR1C8PQ5T2L2 129 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 OR4A47Q6IF82 309 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 HAPLN4Q86UW8 402 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 OR5AN1Q8NGI8 311 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 OR13D1Q8NGV5 346 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 NARS2Q96I59 477 aaKnown RBP11.59□□□□□ -0.55
LIG3-205ENST00000585941 OR4C12Q96R67 309 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 PCGF1Q9BSM1 259 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 TMEM133Q9H2Q1 129 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 PRNDQ9UKY0 176 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 TMEM218A2RU14 115 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 BTBD17A6NE02 478 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 ARG1P05089 322 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 IGFBP2P18065 325 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 PRRX1P54821 245 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 OR2B8PP59922 312 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 SERF2P84101 59 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 ARL16Q0P5N6 197 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 WDR25Q64LD2 544 aaPredicted RBP11.59□□□□□ -0.55
LIG3-205ENST00000585941 THNSL2Q86YJ6 484 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 ABHD12Q8N2K0 398 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 FAM213BQ8TBF2 198 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 ZDHHC16Q969W1 377 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 TMEM147Q9BVK8 224 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 TMEM14BQ9NUH8 114 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 FKBP11Q9NYL4 201 aa11.59□□□□□ -0.55
LIG3-205ENST00000585941 IL6RP08887 468 aaPredicted RBP11.58□□□□□ -0.56
LIG3-205ENST00000585941 MC5RP33032 325 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 RAB13P51153 203 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 ERVFRD-1P60508 538 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 HSPE1P61604 102 aaKnown RBP11.58□□□□□ -0.56
LIG3-205ENST00000585941 TLE4Q04727 773 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 AVPI1Q5T686 147 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 OR8G2PQ6IF36 304 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 PDPNQ86YL7 162 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 VKORC1L1Q8N0U8 176 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 ST6GALNAC6Q969X2 333 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 WDR61Q9GZS3 305 aaKnown RBP11.58□□□□□ -0.56
LIG3-205ENST00000585941 HEYLQ9NQ87 328 aaPredicted RBP11.58□□□□□ -0.56
LIG3-205ENST00000585941 UQCC1Q9NVA1 299 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 BET1LQ9NYM9 111 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 ZNF257Q9Y2Q1 563 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 TIMM9Q9Y5J7 89 aa11.58□□□□□ -0.56
LIG3-205ENST00000585941 MALRD1Q5VYJ5 2156 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 PPIAL4CA0A0B4J2A2 164 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 H0YJW9 148 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 PPIAL4GP0DN37 164 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 DVL1P1P54792 670 aaPredicted RBP11.57□□□□□ -0.56
LIG3-205ENST00000585941 RAB2AP61019 212 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 RUNX1Q01196 453 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 TMEM177Q53S58 311 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 C11orf42Q8N5U0 333 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 MRPL20Q9BYC9 149 aaKnown RBP11.57□□□□□ -0.56
LIG3-205ENST00000585941 TREM1Q9NP99 234 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 TCF19Q9Y242 345 aa11.57□□□□□ -0.56
LIG3-205ENST00000585941 PMS2P5A8MQ11 134 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 H7C2Y5 167 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 UPK2O00526 184 aa11.56□□□□□ -0.56
LIG3-205ENST00000585941 HBE1P02100 147 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms