RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 UBL4BQ8N7F7 174 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 OR2T27Q8NH04 317 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNF563Q8TA94 476 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 NMNAT3Q96T66 252 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 CCL13Q99616 98 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 DRC3Q9H069 523 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNHIT6Q9NWK9 470 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 BABAM2Q9NXR7 383 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 NKIRAS1Q9NYS0 192 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 POLR1DQ9Y2S0 133 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 RBM7Q9Y580 266 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 CR1P17927 2039 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 FBN3Q75N90 2809 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 RGS12O14924 1447 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 SDK1Q7Z5N4 2213 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 RTTNQ86VV8 2226 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 GRIFINA4D1Z8 144 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 TMEM235A6NFC5 223 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 CCL5P13501 91 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 CD24P25063 80 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 TAS2R30P59541 319 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 TBPL1P62380 186 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 FKBP1AP62942 108 aaKnown RBP1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 RSU1Q15404 277 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 COQ5Q5HYK3 327 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 C1orf195Q5TG92 126 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 OR10K2Q6IF99 312 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 CD200R1LQ6Q8B3 271 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 AGTRAPQ6RW13 159 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 ALKAL1Q6UXT8 129 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 Q6ZRN7 208 aaPredicted RBP1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNF550Q7Z398 422 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 GLT6D1Q7Z4J2 308 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNF283Q8N7M2 679 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 RAB2BQ8WUD1 216 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 RAB8BQ92930 207 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 PTH2Q96A98 100 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 GNPNAT1Q96EK6 184 aaPredicted RBP1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 CCDC88AQ3V6T2 1871 aa1.32□□□□□ -2.2
SMCHD1-204ENST00000581226 DENND4BO75064 1496 aaPredicted RBP1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 KDM5BQ9UGL1 1544 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 J3QQQ9 107 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 LST1O00453 97 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 COX7A2LO14548 114 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 SLC16A4O15374 487 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 TGOLN2O43493 480 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 SSNA1O43805 119 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 NIPSNAP2O75323 286 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 OCM2P0CE71 109 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 DDTP30046 118 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 PEBP1P30086 187 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 MAP2K4P45985 399 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 GABRA2P47869 451 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 RPL26P61254 145 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 HOXC5Q00444 222 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 UAP1Q16222 522 aaPredicted RBP1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNF791Q3KP31 576 aaPredicted RBP1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 TNFAIP8L3Q5GJ75 292 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 SLC35F6Q8N357 371 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 PIGXQ8TBF5 258 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 RNF133Q8WVZ7 376 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 OR51I1Q9H343 314 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 USE1Q9NZ43 259 aa1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 RPL26L1Q9UNX3 145 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-204ENST00000581226 FREM1Q5H8C1 2179 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 A8MUN3 132 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 LRRN3E7EW58 273 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 KRT75O95678 551 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 BTN3A2P78410 334 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 LRRC75BQ2VPJ9 315 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 CLVS2Q5SYC1 327 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 FAM78BQ5VT40 261 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 RASSF6Q6ZTQ3 369 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 JOSD2Q8TAC2 188 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNF675Q8TD23 568 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 MIEN1Q9BRT3 115 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 C3orf18Q9UK00 162 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 PCDH15Q96QU1 1955 aa1.3□□□□□ -2.2
SMCHD1-204ENST00000581226 DOCK5Q9H7D0 1870 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 ZNF705FA8MVS1 300 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 INMT-MINDY4F8WBC2 141 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 BHLHE40O14503 412 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 UBE2L6O14933 153 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 PLA2G10O15496 165 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 NPYP01303 97 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 BPGMP07738 259 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 RPL27AP46776 148 aaKnown RBP1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 NAA20P61599 178 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 EMX1Q04741 257 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 C10orf67Q8IYJ2 551 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 TMEM86BQ8N661 226 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 OR2T4Q8NH00 348 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 TESCQ96BS2 214 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 ARL5BQ96KC2 179 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 TIMM21Q9BVV7 248 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 TMEM222Q9H0R3 208 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 CXorf21Q9HAI6 301 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 PARVGQ9HBI0 331 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 PXMP4Q9Y6I8 212 aa1.29□□□□□ -2.2
SMCHD1-204ENST00000581226 BAZ2BQ9UIF8 2168 aaKnown RBP1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms