RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 HNF4GQ14541 408 aa20.17■□□□□ 0.82
SHMT1-207ENST00000580002 IL17RELQ6ZVW7 336 aa20.17■□□□□ 0.82
SHMT1-207ENST00000580002 RNASE11Q8TAA1 199 aaKnown RBP20.17■□□□□ 0.82
SHMT1-207ENST00000580002 C2orf50Q96LR7 162 aa20.17■□□□□ 0.82
SHMT1-207ENST00000580002 RPS16P62249 146 aaKnown RBP20.16■□□□□ 0.82
SHMT1-207ENST00000580002 IL15RAQ13261 267 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 LRRC37A5PQ49AS3 106 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 ZBTB8BQ8NAP8 495 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-207ENST00000580002 FLYWCH2Q96CP2 140 aaKnown RBP20.16■□□□□ 0.82
SHMT1-207ENST00000580002 RANBP3Q9H6Z4 567 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-207ENST00000580002 SHOXO15266 292 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 VENTXO95231 258 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 GIPP09681 153 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-207ENST00000580002 SRSF4Q08170 494 aaKnown RBP20.16■□□□□ 0.82
SHMT1-207ENST00000580002 TMEM177Q53S58 311 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 PDPNQ86YL7 162 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 OR8H3Q8N146 312 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 DMBX1Q8NFW5 382 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 CACNG5Q9UF02 275 aa20.16■□□□□ 0.82
SHMT1-207ENST00000580002 SONP18583 2426 aaKnown RBP20.15■□□□□ 0.82
SHMT1-207ENST00000580002 MDFIC2A0A1B0GVS7 189 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 TXNL1O43396 289 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 IGLV2-23P01705 113 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 NQO2P16083 231 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 MC5RP33032 325 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 OR2T35Q8NGX2 323 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 LSM10Q969L4 123 aaKnown RBP20.15■□□□□ 0.82
SHMT1-207ENST00000580002 RRNAD1Q96FB5 475 aaKnown RBP20.15■□□□□ 0.82
SHMT1-207ENST00000580002 RHOVQ96L33 236 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 HARBI1Q96MB7 349 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 MMP24Q9Y5R2 645 aa20.15■□□□□ 0.82
SHMT1-207ENST00000580002 DUXBA0A1W2PPF3 345 aa20.14■□□□□ 0.81
SHMT1-207ENST00000580002 IGKV1D-33P01593 117 aa20.14■□□□□ 0.81
SHMT1-207ENST00000580002 IGKV1-33P01594 117 aa20.14■□□□□ 0.81
SHMT1-207ENST00000580002 HABP2Q14520 560 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-207ENST00000580002 CXorf66Q5JRM2 361 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-207ENST00000580002 MS4A7Q9GZW8 240 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-207ENST00000580002 TMEM140Q9NV12 185 aa20.14■□□□□ 0.81
SHMT1-207ENST00000580002 TRAV14DV4A0A0A6YYC5 116 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 FSHBP01225 129 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 SNRNP70P08621 437 aaKnown RBP20.13■□□□□ 0.81
SHMT1-207ENST00000580002 RRASP10301 218 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 MYOD1P15172 320 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 C11orf87Q6NUJ2 197 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 H2BFWTQ7Z2G1 175 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 OR11H4Q8NGC9 324 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 PPP1R1CQ8WVI7 109 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 COMMD9Q9P000 198 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 SAA1P0DJI8 122 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-207ENST00000580002 F2RL1P55085 397 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 DHRS7BQ6IAN0 325 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-207ENST00000580002 OR4A47Q6IF82 309 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 TCTE3Q8IZS6 198 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 OR4D5Q8NGN0 318 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 OR4C13Q8NGP0 309 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 TPSG1Q9NRR2 321 aa20.13■□□□□ 0.81
SHMT1-207ENST00000580002 SCGB1D2O95969 90 aa20.12■□□□□ 0.81
SHMT1-207ENST00000580002 CD1BP29016 333 aa20.12■□□□□ 0.81
SHMT1-207ENST00000580002 NKX2-5P52952 324 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-207ENST00000580002 OR2B8PP59922 312 aa20.12■□□□□ 0.81
SHMT1-207ENST00000580002 RAB32Q13637 225 aa20.12■□□□□ 0.81
SHMT1-207ENST00000580002 FOXRED2Q8IWF2 684 aa20.12■□□□□ 0.81
SHMT1-207ENST00000580002 MXRA5Q9NR99 2828 aa20.12■□□□□ 0.81
SHMT1-207ENST00000580002 OOSP1A8MZH6 123 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 PITX3O75364 302 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 MBPP02686 304 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-207ENST00000580002 RAP2BP61225 183 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 OSR1Q8TAX0 266 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-207ENST00000580002 EAF1Q96JC9 268 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-207ENST00000580002 NMES1Q9C002 83 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 FAM90A9PA6NNJ1 464 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 H0YIZ8 118 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 KCNAB3O43448 404 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 CD5LO43866 347 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 CCDC144NLQ6NUI1 221 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 MAGT1Q9H0U3 335 aa20.11■□□□□ 0.81
SHMT1-207ENST00000580002 A0A1B0GU03 582 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 SLC25A17O43808 307 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 HRASP01112 189 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 IL6RP08887 468 aaPredicted RBP20.1■□□□□ 0.81
SHMT1-207ENST00000580002 ERVK-16P61578 105 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 RELBQ01201 579 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 HES1Q14469 280 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 SMCO1Q147U7 214 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 PIFOQ8TCI5 191 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 YAE1D1Q9NRH1 226 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 NUP50Q9UKX7 468 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 TNCP24821 2201 aa20.1■□□□□ 0.81
SHMT1-207ENST00000580002 PJVKQ0ZLH3 352 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 POU2AF1Q16633 256 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 MRGPRG-AS1Q2M3A8 158 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 SPINK9Q5DT21 86 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 PUSL1Q8N0Z8 303 aaKnown RBP20.09■□□□□ 0.81
SHMT1-207ENST00000580002 OR1S1Q8NH92 325 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 NANPQ8TBE9 248 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 RNF126Q9BV68 326 aa20.09■□□□□ 0.81
SHMT1-207ENST00000580002 QTRT1Q9BXR0 403 aaKnown RBP20.09■□□□□ 0.81
SHMT1-207ENST00000580002 PSG5Q15238 335 aa20.08■□□□□ 0.81
SHMT1-207ENST00000580002 DEFB112Q30KQ8 113 aa20.08■□□□□ 0.81
SHMT1-207ENST00000580002 THOC7Q6I9Y2 204 aaKnown RBP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms