RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 OR6C3Q9NZP0 311 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 CXorf65A6NEN9 183 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 B4DEV8 164 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 M0R1X1 148 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 IFNA1P01562 189 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 MBP02144 154 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 FAM27E3Q08E93 113 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 HNF4GQ14541 408 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 RPL39P5Q59GN2 51 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 C22orf34Q6ZV56 151 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 C12orf57Q99622 126 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 CALYQ9NYX4 217 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 RNF7Q9UBF6 113 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 CNOT1A5YKK6 2376 aaKnown RBP8.34□□□□□ -1.07
VPS53-220ENST00000576149 C15orf62A8K5M9 175 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 ITGB1BP1O14713 200 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 LY86O95711 162 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 OR2B8PP59922 312 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 RPS16P62249 146 aaKnown RBP8.34□□□□□ -1.07
VPS53-220ENST00000576149 PNRC1Q12796 327 aaPredicted RBP8.34□□□□□ -1.07
VPS53-220ENST00000576149 ELOBQ15370 118 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 C17orf58Q2M2W7 97 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 FAM201AQ5SY85 155 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 FAM180AQ6UWF9 173 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 PRSS33Q8NF86 280 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 Q8TCH9 128 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 NPCDR1Q9BY65 106 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 GCM1Q9NP62 436 aa8.34□□□□□ -1.07
VPS53-220ENST00000576149 CTXND1A0A1B0GTU2 59 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 EIF3GO75821 320 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS53-220ENST00000576149 IFNA17P01571 189 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 IGHV1-46P01743 117 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 IGHV3-7P01780 117 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 IGHV2-5P01817 119 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SELENOVP59797 346 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SPCS3P61009 180 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 TFF3Q07654 80 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 PRAMEF5Q5TYX0 476 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 RBMS3Q6XE24 437 aaKnown RBP8.33□□□□□ -1.08
VPS53-220ENST00000576149 OR10G9Q8NGN4 311 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 OR10G7Q8NGN6 311 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 OR52E5Q8NH55 327 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SDSLQ96GA7 329 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SVILO95425 2214 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 DIDO1Q9BTC0 2240 aaKnown RBP8.33□□□□□ -1.08
VPS53-220ENST00000576149 DMXL1Q9Y485 3027 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SLC31A2O15432 143 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 CD40P25942 277 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 PLA2G5P39877 138 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 MEOX2P50222 304 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 RAB7AP51149 207 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 CASP6P55212 293 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 TNFAIP6P98066 277 aaPredicted RBP8.33□□□□□ -1.08
VPS53-220ENST00000576149 PDLIM3Q53GG5 364 aaPredicted RBP8.33□□□□□ -1.08
VPS53-220ENST00000576149 FFAR4Q5NUL3 377 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 C1orf229Q6ZS94 237 aaPredicted RBP8.33□□□□□ -1.08
VPS53-220ENST00000576149 SSX9Q7RTT3 188 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 ZNF709Q8N972 641 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 OR4A16Q8NH70 328 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 Q8WTZ3 238 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 DDB2Q92466 427 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 FAM122AQ96E09 287 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 S1PR3Q99500 378 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 FAM234AQ9H0X4 552 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SLC25A22Q9H936 323 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 SDF2L1Q9HCN8 221 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 RAB9BQ9NP90 201 aa8.33□□□□□ -1.08
VPS53-220ENST00000576149 METTL1Q9UBP6 276 aaKnown RBP8.33□□□□□ -1.08
VPS53-220ENST00000576149 KBTBD11-OT1A0A1B0GTJ5 212 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 NQO2P16083 231 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 BMP5P22003 454 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 KIR2DS2P43631 304 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 GNG10P50151 68 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 CD81P60033 236 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 ERVFRD-1P60508 538 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 ERVK-16P61578 105 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 UTF1Q5T230 341 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 STUMQ69YW2 141 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 ZNF343Q6P1L6 599 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 WFDC12Q8WWY7 111 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 ACTR3CQ9C0K3 210 aaPredicted RBP8.32□□□□□ -1.08
VPS53-220ENST00000576149 TMEM242Q9NWH2 141 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 GFOD1Q9NXC2 390 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 C17orf112F2Z3M2 114 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 CYB5R3P00387 301 aaPredicted RBP8.32□□□□□ -1.08
VPS53-220ENST00000576149 CXCL1P09341 107 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 CCKARP32238 428 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 RPS10P46783 165 aaKnown RBP8.32□□□□□ -1.08
VPS53-220ENST00000576149 RELBQ01201 579 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 MEF2BQ02080 365 aaPredicted RBP8.32□□□□□ -1.08
VPS53-220ENST00000576149 FABP9Q0Z7S8 132 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 CT45A1Q5HYN5 189 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 WDR25Q64LD2 544 aaPredicted RBP8.32□□□□□ -1.08
VPS53-220ENST00000576149 DUX4L9Q6RFH8 374 aaPredicted RBP8.32□□□□□ -1.08
VPS53-220ENST00000576149 VKORC1L1Q8N0U8 176 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 Q8N7P7 452 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 CT45A3Q8NHU0 189 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 TMPRSS5Q9H3S3 457 aa8.32□□□□□ -1.08
VPS53-220ENST00000576149 HMGB3O15347 200 aaKnown RBP8.31□□□□□ -1.08
VPS53-220ENST00000576149 DSPP15924 2871 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms