RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 RPL22L1Q6P5R6 122 aaKnown RBP5.57□□□□□ -1.52
VPS53-217ENST00000575100 ZNF782Q6ZMW2 699 aaPredicted RBP5.57□□□□□ -1.52
VPS53-217ENST00000575100 FAM220AQ7Z4H9 259 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 OR13D1Q8NGV5 346 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 ADTRPQ96IZ2 230 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 SORCS2Q96PQ0 1159 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 DOK1Q99704 481 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 IL36RNQ9UBH0 155 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 Q9UF83 564 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 R4GMQ9 66 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 ZFHX3Q15911 3703 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 ANKHD1Q8IWZ3 2542 aaKnown RBP5.57□□□□□ -1.52
VPS53-217ENST00000575100 A6NIN4 97 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 SLC22A5O76082 557 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 IGHV4-30-4P0DP06 118 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ZNF14P17017 642 aaPredicted RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 FUT3P21217 361 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 PAFAH1B2P68402 229 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 BTN1A1Q13410 526 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 P2RY6Q15077 328 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ZNF101Q8IZC7 436 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 OR8B12Q8NGG6 310 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ZNF502Q8TBZ5 544 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 GATAD1Q8WUU5 269 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 VPS25Q9BRG1 176 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 AGMATQ9BSE5 352 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 PBOV1Q9GZY1 135 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 HMG20AQ9NP66 347 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 TXNL4BQ9NX01 149 aaKnown RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 RSL24D1Q9UHA3 163 aaKnown RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 ZNF107Q9UII5 783 aaPredicted RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 YLPM1P49750 1951 aaKnown RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 C5orf49A4QMS7 147 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 OR5H1A6NKK0 313 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 M0R135 149 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 GABRPO00591 440 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 PIN1P1O15428 100 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 NGFP01138 241 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 IGKV3-15P01624 115 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 WNT2P09544 360 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 PSMB1P20618 241 aaKnown RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 PSMA1P25786 263 aaKnown RBP5.56□□□□□ -1.52
VPS53-217ENST00000575100 SSTR5P35346 364 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 AKR1C3P42330 323 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 TMBIM6P55061 237 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 PCBD1P61457 104 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 TGFBR3Q03167 851 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 OR8G1Q15617 311 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 TAB1Q15750 504 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 TBC1D28Q2M2D7 210 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 SLC25A35Q3KQZ1 300 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 VAX1Q5SQQ9 334 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 VKORC1L1Q8N0U8 176 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 MTURNQ8N3F0 131 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ZNF283Q8N7M2 679 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 SPATA3Q8NHX4 192 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 OR51E1Q8TCB6 317 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ZNF799Q96GE5 643 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 LYZL4Q96KX0 146 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 KRTAP4-8Q9BYQ9 185 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ARL6Q9H0F7 186 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 TLNRD1Q9H1K6 362 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 SLC25A15Q9Y619 301 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ABCA4P78363 2273 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 ACANP16112 2415 aa5.56□□□□□ -1.52
VPS53-217ENST00000575100 LOC107986453A0A1B0GWG9 222 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 TSTD3H0UI37 97 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 FCN1O00602 326 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 RP2O75695 350 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 UBL3O95164 117 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 METTL15P1P0C7V9 234 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 CD200P41217 278 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 TAS2R43P59537 309 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 TAS2R31P59538 309 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 UBE2NP61088 152 aaKnown RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 GRB2P62993 217 aaKnown RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 TMEM187Q14656 261 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 HSD17B12Q53GQ0 312 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 DNLZQ5SXM8 178 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 NR2C2APQ86WQ0 139 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 ZNF676Q8N7Q3 588 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 OR5AK2Q8NH90 309 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 RAB2BQ8WUD1 216 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 KCTD7Q96MP8 289 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 NKX3-1Q99801 234 aaPredicted RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 MLST8Q9BVC4 326 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 EXOSC4Q9NPD3 245 aaKnown RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 COPZ2Q9P299 210 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 NUFIP1Q9UHK0 495 aaKnown RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 KCNS2Q9ULS6 477 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 HRNRQ86YZ3 2850 aaPredicted RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 IGHV1-18A0A0C4DH31 117 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 TRDV1A0A1B0GX56 115 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 CNIH1O95406 144 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 GCGP01275 180 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 IGLV3-1P01715 115 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 IGHV2-5P01817 119 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 CECR9P0C854 216 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 C4BPBP20851 252 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms