RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 IL36BQ9NZH7 164 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 GTF3C1Q12789 2109 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 ODAMA1E959 279 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 RBFOX2O43251 390 aaKnown RBP eCLIP8.09□□□□□ -1.11
CCDC40-212ENST00000574799 GNG4P50150 75 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 PMCHL1Q16048 86 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 FGFRL1Q8N441 504 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 AGBL5Q8NDL9 886 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 SH2D2AQ9NP31 389 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 IL36RNQ9UBH0 155 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 ATP23Q9Y6H3 246 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 DOCK10Q96BY6 2186 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 RIF1Q5UIP0 2472 aaKnown RBP8.09□□□□□ -1.11
CCDC40-212ENST00000574799 IGHV2OR16-5A0A0B4J2B6 119 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 DEGS1O15121 323 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 ACTL6BO94805 426 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 PCOLCEQ15113 449 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 AAED1Q7RTV5 226 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 OR2Y1Q8NGV0 311 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 IFI44Q8TCB0 444 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 SSMEM1Q8WWF3 244 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 SMIM12Q96EX1 92 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF488Q96MN9 340 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 NPCDR1Q9BY65 106 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 GSX1Q9H4S2 264 aaPredicted RBP8.09□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF430Q9H8G1 570 aaPredicted RBP8.09□□□□□ -1.12
CCDC40-212ENST00000574799 KCNIP2Q9NS61 270 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.09□□□□□ -1.12
CCDC40-212ENST00000574799 OR1A1Q9P1Q5 309 aa8.09□□□□□ -1.12
CCDC40-212ENST00000574799 NCOA6Q14686 2063 aaPredicted RBP8.09□□□□□ -1.12
CCDC40-212ENST00000574799 DMXL2Q8TDJ6 3036 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 IGLV3-32A0A0A0MS00 114 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 CIDEAO60543 219 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF324O75467 553 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ZFAND5O76080 213 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ARL14EPLP0DKL9 152 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 CCL4P13236 92 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 KCNMB1Q16558 191 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 C1orf185Q5T7R7 199 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 AMMECR1LQ6DCA0 310 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 HAPLN4Q86UW8 402 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 SSC4DQ8WTU2 575 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 GMPPAQ96IJ6 420 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 KCNS1Q96KK3 526 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 CHCHD2Q9Y6H1 151 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ZDBF2Q9HCK1 2354 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 TRAV30A0A087WSZ9 112 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 LOC102723996A0A087X1L8 192 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ZG16O60844 167 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 TIMP3P35625 211 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 RPL31P62899 125 aaKnown RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 CATR1Q13166 79 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF324BQ6AW86 544 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF837Q96EG3 531 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 FAM234AQ9H0X4 552 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 KCNIP1Q9NZI2 227 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 EP300Q09472 2414 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 USF1P22415 310 aaPredicted RBP8.08□□□□□ -1.12
CCDC40-212ENST00000574799 CAMPP49913 170 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 GABRA6Q16445 453 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 HIST3H3Q16695 136 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 DTX1Q86Y01 620 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 TIMM9Q9Y5J7 89 aa8.08□□□□□ -1.12
CCDC40-212ENST00000574799 APCSP02743 223 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 CCL2P13500 99 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 GFRA1P56159 465 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 PRDX4Q13162 271 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 LTC4SQ16873 150 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 MPV17L2Q567V2 206 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 SLC25A53Q5H9E4 307 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF891A8MT65 544 aaPredicted RBP8.07□□□□□ -1.12
CCDC40-212ENST00000574799 LHX2P50458 406 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 OR5P3Q8WZ94 311 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 LSM10Q969L4 123 aaKnown RBP8.07□□□□□ -1.12
CCDC40-212ENST00000574799 ZDHHC16Q969W1 377 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 DUSP23Q9BVJ7 150 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 ZNF292O60281 2723 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 NBEAQ8NFP9 2946 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 GAGE10A6NGK3 116 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 MT-ND6P03923 174 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 CA6P23280 308 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 NPPCP23582 126 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 PRRX1P54821 245 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 YPEL3P61236 119 aaPredicted RBP8.07□□□□□ -1.12
CCDC40-212ENST00000574799 RAB31Q13636 194 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 CEACAM16Q2WEN9 425 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 ACSF3Q4G176 576 aaPredicted RBP8.07□□□□□ -1.12
CCDC40-212ENST00000574799 C19orf35Q6ZS72 473 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 DOLPP1Q86YN1 238 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 OR52L2PQ8NGH6 319 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 IMMP1LQ96LU5 166 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 CDC42EP3Q9UKI2 254 aa8.07□□□□□ -1.12
CCDC40-212ENST00000574799 IGHV1-45A0A0A0MS14 117 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 IGHV1-69-2A0A0G2JMI3 117 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 A0A1W2PN81 502 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 TMEM238C9JI98 176 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 TNFSF11O14788 317 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 VAMP5O95183 116 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 COX6A1P12074 109 aa8.06□□□□□ -1.12
CCDC40-212ENST00000574799 PCBD1P61457 104 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms