RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TEAD3Q99594 435 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 SMR3AQ99954 134 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 MROQ9BYG7 248 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 YIPF3Q9GZM5 350 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 ARL6Q9H0F7 186 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 GABARAPL1Q9H0R8 117 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 IMPAD1Q9NX62 359 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 ZNF107Q9UII5 783 aaPredicted RBP4.83□□□□□ -1.64
VPS53-212ENST00000572259 ZNF391Q9UJN7 358 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 ARHGAP32A7KAX9 2087 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 TANC2Q9HCD6 1990 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 B4DSR2 109 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LYNX1G3V0Z9 82 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 CDIPTO14735 213 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 BUB3O43684 328 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LMX1BO60663 402 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 ATP6V1G2O95670 118 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 OR8U9P0C7N5 309 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 FRMD6-AS1P0C7T7 363 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LIMS3P0CW19 117 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LIMS4P0CW20 117 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LYNX1P0DP58 116 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 FUT3P21217 361 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 GNRHRP30968 328 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 RPS27P42677 84 aaKnown RBP4.82□□□□□ -1.64
VPS53-212ENST00000572259 NANOS2P60321 138 aaKnown RBP4.82□□□□□ -1.64
VPS53-212ENST00000572259 ECSCRQ19T08 205 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 RSPO1Q2MKA7 263 aaPredicted RBP4.82□□□□□ -1.64
VPS53-212ENST00000572259 KRTAP27-1Q3LI81 207 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 CHRFAM7AQ494W8 412 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LINC01590Q5TEZ4 76 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 NXNL2Q5VZ03 156 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 TMEM236Q5W0B7 351 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 LRRN1Q6UXK5 716 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 OR5AS1Q8N127 324 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 SPICQ8N5J4 248 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 OR11L1Q8NGX0 322 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 OR8U1Q8NH10 309 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 SPATA3Q8NHX4 192 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 DYRK2Q92630 601 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 RASL10AQ92737 203 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 MRPL48Q96GC5 212 aaKnown RBP4.82□□□□□ -1.64
VPS53-212ENST00000572259 SCGB3A2Q96PL1 93 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 ADGRL4Q9HBW9 690 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 ABCB9Q9NP78 766 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 ACOT13Q9NPJ3 140 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 Q9UF83 564 aa4.82□□□□□ -1.64
VPS53-212ENST00000572259 KIR2DL5BA0A0G2JN68 375 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 KIR2DL5BA0A0G2JPC4 375 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 ISPDA4D126 451 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 CD300LBA8K4G0 201 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 ZNF670-ZNF695F2Z2N8 137 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 RLN2P04090 185 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 FCGR3AP08637 254 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 WNT2P09544 360 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 IGHV4-38-2P0DP08 117 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 CD36P16671 472 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 ALOX5APP20292 161 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 RAB5AP20339 215 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 SLC2A5P22732 501 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 HTR1DP28221 377 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 OPRL1P41146 370 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 HOXA1P49639 335 aaPredicted RBP4.81□□□□□ -1.64
VPS53-212ENST00000572259 RIDAP52758 137 aaKnown RBP4.81□□□□□ -1.64
VPS53-212ENST00000572259 TAS2R31P59538 309 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 SPCS3P61009 180 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 CD164Q04900 197 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 SPCS2Q15005 226 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 SLC9A3R2Q15599 337 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 OR8G1Q15617 311 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 KCNJ8Q15842 424 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 C6orf52Q5T4I8 152 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 LINC00242Q5T6M2 205 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 TPTE2P1Q5T6R2 138 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 HACD4Q5VWC8 232 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 MEDAGQ5VYS4 303 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 CD200R1LQ6Q8B3 271 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 LHFPL3Q86UP9 236 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 NAA40Q86UY6 237 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 KIR2DL5AQ8N109 375 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 KIR2DL5BQ8NHK3 375 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 ITLN1Q8WWA0 313 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 YIPF5Q969M3 257 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 REEP6Q96HR9 211 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 KCTD7Q96MP8 289 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 OR2V2Q96R30 315 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 GABARAPL3Q9BY60 117 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 CHIAQ9BZP6 476 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 NXF2Q9GZY0 626 aaKnown RBP4.81□□□□□ -1.64
VPS53-212ENST00000572259 ELL3Q9HB65 397 aaPredicted RBP4.81□□□□□ -1.64
VPS53-212ENST00000572259 DIABLOQ9NR28 239 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 TMEM106BQ9NUM4 274 aa4.81□□□□□ -1.64
VPS53-212ENST00000572259 A0A096LNT2 108 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 LOC100131303A0A0U1RQF7 123 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 TMEM269A0A1B0GVZ9 245 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 MEIOCA2RUB1 952 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 SMKR1H3BMG3 65 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 CCRL2O00421 344 aa4.8□□□□□ -1.64
VPS53-212ENST00000572259 PHF1O43189 567 aaPredicted RBP4.8□□□□□ -1.64
VPS53-212ENST00000572259 SYNGR1O43759 233 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms