RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PPP1R2P9O14990 202 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 SPCS3P61009 180 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 ACOT6Q3I5F7 207 aaPredicted RBP18.86■□□□□ 0.61
VPS53-211ENST00000571805 SSX9Q7RTT3 188 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 ZNRF1Q8ND25 227 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 IFI27L2Q9H2X8 130 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 RBFOX2O43251 390 aaKnown RBP eCLIP18.86■□□□□ 0.618e-7■■□□□ 13.4
VPS53-211ENST00000571805 IGHV3-13P01766 116 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 CDC34P49427 236 aaPredicted RBP18.86■□□□□ 0.61
VPS53-211ENST00000571805 ZNF83P51522 516 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 PRAMEF5Q5TYX0 476 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 PPP1R35Q8TAP8 253 aa18.86■□□□□ 0.61
VPS53-211ENST00000571805 LY86O95711 162 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 VDAC2P45880 294 aaPredicted RBP18.85■□□□□ 0.61
VPS53-211ENST00000571805 C4orf17Q53FE4 359 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 VKORC1L1Q8N0U8 176 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 OR10A7Q8NGE5 316 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 OR2V2Q96R30 315 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 CACNA1HO95180 2353 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 CEACAM4O75871 244 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 IGHV3-7P01780 117 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 NPPCP23582 126 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 PDLIM3Q53GG5 364 aaPredicted RBP18.85■□□□□ 0.61
VPS53-211ENST00000571805 GCSAMLQ5JQS6 135 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 C1orf229Q6ZS94 237 aaPredicted RBP18.85■□□□□ 0.61
VPS53-211ENST00000571805 OR51G1Q8NGK1 321 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 OR52E5Q8NH55 327 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 OR4A16Q8NH70 328 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 NEIL1Q96FI4 390 aaPredicted RBP18.85■□□□□ 0.61
VPS53-211ENST00000571805 MEGF10Q96KG7 1140 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 FAM234AQ9H0X4 552 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 SRD5A3Q9H8P0 318 aa18.85■□□□□ 0.61
VPS53-211ENST00000571805 TET2Q6N021 2002 aaPredicted RBP18.84■□□□□ 0.61
VPS53-211ENST00000571805 LHBP01229 141 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 RELBQ01201 579 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 MOGAT3Q86VF5 341 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 OR10D4PQ8NGN7 298 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 CGB3P0DN86 165 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 CGB7P0DN87 165 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 UTF1Q5T230 341 aa18.84■□□□□ 0.61
VPS53-211ENST00000571805 SVILO95425 2214 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 TRAV3A0A0B4J244 114 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 PRSS46E5RG02 174 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 RRHO14718 337 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 TMEM249Q2WGJ8 235 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 PDZD11Q5EBL8 140 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 ALKBH2Q6NS38 261 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 ZNF474Q6S9Z5 364 aaPredicted RBP18.83■□□□□ 0.61
VPS53-211ENST00000571805 OR4X1Q8NH49 305 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 DDB2Q92466 427 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 S100PBPQ96BU1 408 aa18.83■□□□□ 0.61
VPS53-211ENST00000571805 SMCO3A2RU48 225 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 M0R1B8 84 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 SLC31A2O15432 143 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 IFNA10P01566 189 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 CDPF1Q6NVV7 123 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 NECAP1Q8NC96 275 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 RAB1CQ92928 201 aa18.83■□□□□ 0.6
VPS53-211ENST00000571805 CADP27708 2225 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 TRAV38-1A0A0B4J264 116 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 C11orf94C9JXX5 98 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 H7BYZ3 331 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 EDDM3BP56851 147 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 RPP30P78346 268 aaKnown RBP18.82■□□□□ 0.6
VPS53-211ENST00000571805 RTP5Q14D33 572 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 TREML4Q6UXN2 200 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 TMEM170AQ8WVE7 144 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 CALYQ9NYX4 217 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 DMRT1Q9Y5R6 373 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 OTOGLQ3ZCN5 2332 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 GFRA3O60609 400 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 GYPAP02724 150 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 GALR1P47211 349 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 TMPRSS3P57727 454 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 TIMM23BQ5SRD1 257 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 S1PR3Q99500 378 aa18.82■□□□□ 0.6
VPS53-211ENST00000571805 HEYLQ9NQ87 328 aaPredicted RBP18.82■□□□□ 0.6
VPS53-211ENST00000571805 MPDU1O75352 247 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 GLRXP35754 106 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 KLF3P57682 345 aaPredicted RBP18.81■□□□□ 0.6
VPS53-211ENST00000571805 ERVK-16P61578 105 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 GAB2Q9UQC2 676 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 DSCAMO60469 2012 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 VENTXO95231 258 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 C17orf58Q2M2W7 97 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 TGIF2LYQ8IUE0 185 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 ITLN1Q8WWA0 313 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 ELOVL1Q9BW60 279 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 TMEM140Q9NV12 185 aa18.81■□□□□ 0.6
VPS53-211ENST00000571805 TRAV20A0A0B4J274 112 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 SPRY3O43610 288 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 SOX15O60248 233 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 OPRK1P41145 380 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 ABHD12Q8N2K0 398 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 ZADH2Q8N4Q0 377 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 ANAPC16Q96DE5 110 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 NCOR1P1Q9H4R4 102 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 DSCAML1Q8TD84 2053 aa18.8■□□□□ 0.6
VPS53-211ENST00000571805 ITGB1BP1O14713 200 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 GALR2O43603 387 aaPredicted RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms