RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TEX45Q8NA69 505 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 PLEKHA2Q9HB19 425 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 RNF114Q9Y508 228 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 TNFSF12O43508 249 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 VDAC2P45880 294 aaPredicted RBP16.31■□□□□ 0.2
VPS53-210ENST00000571456 LINC00205P59089 165 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 UBE2KP61086 200 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 PLGLAQ15195 96 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 PSG5Q15238 335 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 FAAP20Q6NZ36 180 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 GON7Q9BXV9 100 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 COMMD9Q9P000 198 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 COPZ2Q9P299 210 aa16.31■□□□□ 0.2
VPS53-210ENST00000571456 PEX14O75381 377 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 RLN1P04808 185 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 RPA2P15927 270 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 MDKP21741 143 aaPredicted RBP16.3■□□□□ 0.2
VPS53-210ENST00000571456 PIGPP57054 158 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 TAS2R31P59538 309 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 SLC35E3Q7Z769 313 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 CADM3Q8N126 398 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 OR13C8Q8NGS7 320 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 OR51H1Q8NH63 302 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 MARCH1Q8TCQ1 289 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 RITA1Q96K30 269 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 METTL1Q9UBP6 276 aaKnown RBP16.3■□□□□ 0.2
VPS53-210ENST00000571456 GPR132Q9UNW8 380 aa16.3■□□□□ 0.2
VPS53-210ENST00000571456 AP4M1O00189 453 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 MPPED1O15442 326 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 NQO2P16083 231 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 PROK1P58294 105 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 PHLDA2Q53GA4 152 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 C9orf152Q5JTZ5 239 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 PPP1R27Q86WC6 154 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 SERTAD4Q9NUC0 356 aa16.29■□□□□ 0.2
VPS53-210ENST00000571456 PIGBOS1A0A0B4J2F0 54 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 IGLV2-23P01705 113 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 FGF2P09038 288 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 RBMS2Q15434 407 aaKnown RBP16.28■□□□□ 0.2
VPS53-210ENST00000571456 POU2AF1Q16633 256 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 TBC1D26Q86UD7 250 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 OR4A5Q8NH83 315 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 CHPT1Q8WUD6 406 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 MRGPRFQ96AM1 343 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 SIGLEC9Q9Y336 463 aa16.28■□□□□ 0.2
VPS53-210ENST00000571456 H0Y980 276 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 SLC25A17O43808 307 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 ATG12O94817 140 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 CNTFRP26992 372 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 BRWD1-AS2P59051 145 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 ZNF562Q6V9R5 426 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 C1QL4Q86Z23 238 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 RHOVQ96L33 236 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 WNT10AQ9GZT5 417 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 FBXL15Q9H469 300 aa16.27■□□□□ 0.2
VPS53-210ENST00000571456 IGF1P05019 195 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 CRYGBP07316 175 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 ERVK-16P61578 105 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 OR2B11Q5JQS5 317 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 MMD2Q8IY49 270 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 TAF15Q92804 592 aaKnown RBP eCLIP16.26■□□□□ 0.19
VPS53-210ENST00000571456 OR51J1Q9H342 316 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 C5orf66Q9H5L9 145 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 BET1LQ9NYM9 111 aa16.26■□□□□ 0.19
VPS53-210ENST00000571456 SRRM4A7MD48 611 aaKnown RBP16.25■□□□□ 0.19
VPS53-210ENST00000571456 M0QZ24 198 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 RAMP3O60896 148 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 OR2A4O95047 310 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 SERPINE2P07093 398 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 MAS1LP35410 378 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 SLC35B1P78383 322 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 SRSF4Q08170 494 aaKnown RBP16.25■□□□□ 0.19
VPS53-210ENST00000571456 COMMD1Q8N668 190 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 WFDC12Q8WWY7 111 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 OR2A7Q96R45 310 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 GPHA2Q96T91 129 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 RTBDNQ9BSG5 229 aaPredicted RBP16.25■□□□□ 0.19
VPS53-210ENST00000571456 KCNIP3Q9Y2W7 256 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 TNCP24821 2201 aa16.25■□□□□ 0.19
VPS53-210ENST00000571456 C3orf85A0A1B0GTC6 90 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 SAA1P0DJI8 122 aaPredicted RBP16.24■□□□□ 0.19
VPS53-210ENST00000571456 DHODHQ02127 395 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 TMEM267Q0VDI3 215 aaPredicted RBP16.24■□□□□ 0.19
VPS53-210ENST00000571456 Q6ZS46 218 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 SGPP2Q8IWX5 399 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 PUSL1Q8N0Z8 303 aaKnown RBP16.24■□□□□ 0.19
VPS53-210ENST00000571456 TMEM167AQ8TBQ9 72 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 TMEM68Q96MH6 324 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 PLXNB1O43157 2135 aa16.24■□□□□ 0.19
VPS53-210ENST00000571456 IGHV7-81A0A0B4J1V7 117 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 TEX13DA0A0J9YY54 714 aaPredicted RBP16.23■□□□□ 0.19
VPS53-210ENST00000571456 LYRM1O43325 122 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 UPK1BO75841 260 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 ACTL6BO94805 426 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 KBTBD11O94819 623 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 VSIG10L2P0DP72 767 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 PI3P19957 117 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 LPAR6P43657 344 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 CRIP2P52943 208 aaPredicted RBP16.23■□□□□ 0.19
VPS53-210ENST00000571456 UBE2MP61081 183 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms