RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 CT45A3Q8NHU0 189 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 DSCAML1Q8TD84 2053 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 SDSLQ96GA7 329 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 IFI27L2Q9H2X8 130 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 HEYLQ9NQ87 328 aaPredicted RBP8.2□□□□□ -1.1
VPS53-206ENST00000570359 TUBG2Q9NRH3 451 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 IL19Q9UHD0 177 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 WNK2Q9Y3S1 2297 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 DMRT1Q9Y5R6 373 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 LY6HO94772 140 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 NHLH1Q02575 133 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 HABP2Q14520 560 aaPredicted RBP8.2□□□□□ -1.1
VPS53-206ENST00000570359 ZNF124Q15973 351 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 ZNF787Q6DD87 383 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 FAM169BQ8N8A8 192 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 CYB561D1Q8N8Q1 229 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 HSD17B10Q99714 261 aaKnown RBP8.2□□□□□ -1.1
VPS53-206ENST00000570359 TMPRSS5Q9H3S3 457 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 OR6C3Q9NZP0 311 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 MALRD1Q5VYJ5 2156 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 C17orf100A8MU93 164 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 LHBP01229 141 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 RAB5CP51148 216 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 ERVK-16P61578 105 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 SOHLH1Q5JUK2 328 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 STUMQ69YW2 141 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 TCF23Q7RTU1 214 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 ABHD12Q8N2K0 398 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 URGCP-MRPS24S4R325 110 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 ABCA1O95477 2261 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 A0A1W2PPH5 198 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 C7orf77A4D0Y5 90 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 ZNF727A8MUV8 499 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 MMP9P14780 707 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 SNRPEP62304 92 aaKnown RBP8.19□□□□□ -1.1
VPS53-206ENST00000570359 RAB11AP62491 216 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 TLE4Q04727 773 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 EIF4EBP1Q13541 118 aaPredicted RBP8.19□□□□□ -1.1
VPS53-206ENST00000570359 C15orf54Q8N8G6 183 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 OR10P1Q8NGE3 313 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 FAM122AQ96E09 287 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 SLC35B3Q9H1N7 401 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 PPP1R14DQ9NXH3 145 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 SLC25A10Q9UBX3 287 aaPredicted RBP8.19□□□□□ -1.1
VPS53-206ENST00000570359 HSPB7Q9UBY9 170 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 JPT1Q9UK76 154 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 KPTNQ9Y664 436 aa8.19□□□□□ -1.1
VPS53-206ENST00000570359 MAP1AP78559 2803 aaPredicted RBP8.19□□□□□ -1.1
VPS53-206ENST00000570359 CCL21O00585 134 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 RPL31P62899 125 aaKnown RBP8.18□□□□□ -1.1
VPS53-206ENST00000570359 MRPS11P82912 194 aaKnown RBP8.18□□□□□ -1.1
VPS53-206ENST00000570359 HTD2P86397 168 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 RBPJQ06330 500 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 ZNF726P1Q15940 193 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 ZNF674Q2M3X9 581 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 GCSAMLQ5JQS6 135 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 ZNF561Q8N587 486 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 ZBTB34Q8NCN2 500 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 TAF15Q92804 592 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS53-206ENST00000570359 WDR61Q9GZS3 305 aaKnown RBP8.18□□□□□ -1.1
VPS53-206ENST00000570359 TMEM140Q9NV12 185 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 KBTBD11-OT1A0A1B0GTJ5 212 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 hCG_1809904A0A1W2PP81 198 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 A0A1W2PR64 198 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 A0A1W2PRV1 198 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 COLCA2A8K830 154 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 C1orf196B1AJZ1 125 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 IGKV1D-33P01593 117 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 IGKV1-33P01594 117 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 SLC25A6P12236 298 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 CDSNQ15517 529 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 RBMS3Q6XE24 437 aaKnown RBP8.18□□□□□ -1.1
VPS53-206ENST00000570359 ZNF66Q6ZN08 573 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 LYPD6BQ8NI32 183 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 GATAD1Q8WUU5 269 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 RCC1LQ96I51 464 aaKnown RBP8.18□□□□□ -1.1
VPS53-206ENST00000570359 SCRT1Q9BWW7 348 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 HIVEP3Q5T1R4 2406 aa8.18□□□□□ -1.1
VPS53-206ENST00000570359 NAV3Q8IVL0 2385 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.17□□□□□ -1.1
VPS53-206ENST00000570359 NKX6-3A6NJ46 265 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 E7EQL1 145 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 TNFRSF1AP19438 455 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 LY6DQ14210 128 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 FFAR4Q5NUL3 377 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 ACSM6Q6P461 480 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 TRAT1Q6PIZ9 186 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 C1orf174Q8IYL3 243 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 OR5T1Q8NG75 326 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 MAP1LC3B2A6NCE7 125 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 RRHO14718 337 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 RAB29O14966 203 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 IGKV1-16P04430 117 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 TMPRSS3P57727 454 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 KIAA0141Q14154 515 aaPredicted RBP8.17□□□□□ -1.1
VPS53-206ENST00000570359 DIAPH2-AS1Q14236 149 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 ICAM4Q14773 271 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 LRRC75BQ2VPJ9 315 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 FAM24BQ8N5W8 94 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 RHOVQ96L33 236 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms