RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TPSG1Q9NRR2 321 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 FOXA2Q9Y261 457 aaPredicted RBP10.2□□□□□ -0.78
CLK3-224ENST00000568605 WSB1Q9Y6I7 421 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 A3GALT2U3KPV4 340 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 GPR31O00270 319 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 CTDSPLO15194 276 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 SAA1P0DJI8 122 aaPredicted RBP10.19□□□□□ -0.78
CLK3-224ENST00000568605 PSMB8P28062 276 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 RPL30P62888 115 aaKnown RBP10.19□□□□□ -0.78
CLK3-224ENST00000568605 EIF4EBP1Q13541 118 aaPredicted RBP10.19□□□□□ -0.78
CLK3-224ENST00000568605 FXYD3Q14802 87 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 UNQ5815/PRO19632Q6UWF5 114 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 LYSMD2Q8IV50 215 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 ZNF695Q8IW36 515 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 MMD2Q8IY49 270 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 SPAG16Q8N0X2 631 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 OR5M8Q8NGP6 311 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 OR51H1Q8NH63 302 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 GRPEL2Q8TAA5 225 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 TMEM68Q96MH6 324 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 ABHD1Q96SE0 405 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 PHB2Q99623 299 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 NXF2Q9GZY0 626 aaKnown RBP10.19□□□□□ -0.78
CLK3-224ENST00000568605 NDUFA13Q9P0J0 144 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 KLK11Q9UBX7 282 aa10.19□□□□□ -0.78
CLK3-224ENST00000568605 G3V318 75 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 FCN1O00602 326 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 RLN1P04808 185 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 RPLP1P05386 114 aaKnown RBP10.18□□□□□ -0.78
CLK3-224ENST00000568605 DGCR2P98153 550 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 MEF2DQ14814 521 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 TNXAQ16473 311 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 AKIRIN2Q53H80 203 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 SLC38A6Q8IZM9 456 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 TMEM229BQ8NBD8 167 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 FAM103A1Q9BTL3 118 aaKnown RBP10.18□□□□□ -0.78
CLK3-224ENST00000568605 SLA2Q9H6Q3 261 aa10.18□□□□□ -0.78
CLK3-224ENST00000568605 TRRAPQ9Y4A5 3859 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 FABP12A6NFH5 140 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 M0QYG6 137 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 MPPED1O15442 326 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 KBTBD11O94819 623 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 RAB3DO95716 219 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 HPRT1P00492 218 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 IGLV1-40P01703 118 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 CD3DP04234 171 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 CRYGBP07316 175 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 CD33P20138 364 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 PPIFP30405 207 aaKnown RBP10.17□□□□□ -0.78
CLK3-224ENST00000568605 GNRHRP30968 328 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 ECI1P42126 302 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 CDX1P47902 265 aaPredicted RBP10.17□□□□□ -0.78
CLK3-224ENST00000568605 UCP3P55916 312 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 TAS2R31P59538 309 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 ERVK-16P61578 105 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 PRSS8Q16651 343 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 STEAP1BQ6NZ63 245 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 IDO2Q6ZQW0 420 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 MINDY2Q8NBR6 621 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 LFNGQ8NES3 379 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 ZNF486Q96H40 463 aaPredicted RBP10.17□□□□□ -0.78
CLK3-224ENST00000568605 RHOVQ96L33 236 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 PLEKHA2Q9HB19 425 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 COMMD9Q9P000 198 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 FBXO7Q9Y3I1 522 aa10.17□□□□□ -0.78
CLK3-224ENST00000568605 SRRM4A7MD48 611 aaKnown RBP10.16□□□□□ -0.78
CLK3-224ENST00000568605 H3BUA1 57 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 OR2A4O95047 310 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 CD74P04233 296 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 AKAIN1P0CW23 69 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 NQO2P16083 231 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 F2RP25116 425 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 TNFSF8P32971 234 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 MAS1LP35410 378 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 C19orf54Q5BKX5 351 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 C8orf86Q6ZUL3 223 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 DMBX1Q8NFW5 382 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 OR4A5Q8NH83 315 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 C4orf3Q8WVX3 66 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 SRSF12Q8WXF0 261 aaKnown RBP10.16□□□□□ -0.78
CLK3-224ENST00000568605 UBE2E2Q96LR5 201 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 OR2A7Q96R45 310 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 GPHA2Q96T91 129 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 SPIN2AQ99865 258 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 SPIN2BQ9BPZ2 258 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 TINAGL1Q9GZM7 467 aaPredicted RBP10.16□□□□□ -0.78
CLK3-224ENST00000568605 ZNF430Q9H8G1 570 aaPredicted RBP10.16□□□□□ -0.78
CLK3-224ENST00000568605 NUBP2Q9Y5Y2 271 aa10.16□□□□□ -0.78
CLK3-224ENST00000568605 DISC1C4P0D8 188 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 ARPC1BO15143 372 aaKnown RBP10.15□□□□□ -0.78
CLK3-224ENST00000568605 GSTZ1O43708 216 aaPredicted RBP10.15□□□□□ -0.78
CLK3-224ENST00000568605 RAMP3O60896 148 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 PGAM2P15259 253 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 MYCNOSP40205 109 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 PPP5CP53041 499 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 PJVKQ0ZLH3 352 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 PHLDA2Q53GA4 152 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 SPANXN2Q5MJ10 180 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 CCDC71LQ8N9Z2 235 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 TMEM167AQ8TBQ9 72 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms