RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 OR2D2Q9H210 308 aa11.87□□□□□ -0.51
CLK3-223ENST00000568488 C5orf66Q9H5L9 145 aa11.87□□□□□ -0.51
CLK3-223ENST00000568488 AK3Q9UIJ7 227 aa11.87□□□□□ -0.51
CLK3-223ENST00000568488 ZNF257Q9Y2Q1 563 aa11.87□□□□□ -0.51
CLK3-223ENST00000568488 RPL36Q9Y3U8 105 aaKnown RBP11.87□□□□□ -0.51
CLK3-223ENST00000568488 TRBV5-7A0A0A0MS05 114 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 IGHV3-35A0A0C4DH35 117 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 CRYZL1O95825 349 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 LALBAP00709 142 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 CLEC3BP05452 202 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 GSTT2P0CG29 244 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 GSTT2BP0CG30 244 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 RPS11P62280 158 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLK3-223ENST00000568488 RPS27AP62979 156 aaKnown RBP11.86□□□□□ -0.51
CLK3-223ENST00000568488 LAMTOR1Q6IAA8 161 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 CEACAM19Q7Z692 300 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 UQCC2Q9BRT2 126 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 TMEM59Q9BXS4 323 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 MGAT4AQ9UM21 535 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 UFC1Q9Y3C8 167 aa11.86□□□□□ -0.51
CLK3-223ENST00000568488 IGKV1-6A0A0C4DH72 117 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 TSPAN4O14817 238 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 CREBL2O60519 120 aaPredicted RBP11.85□□□□□ -0.51
CLK3-223ENST00000568488 NR2C2APQ86WQ0 139 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 MMD2Q8IY49 270 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 ZNF645Q8N7E2 425 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 MAPKAPK5-AS1Q8N8E1 139 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 CCDC197Q8NCU1 140 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 SETD9Q8NE22 299 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 RHOXF1Q8NHV9 184 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 FYTTD1Q96QD9 318 aaKnown RBP11.85□□□□□ -0.51
CLK3-223ENST00000568488 SLC29A1Q99808 456 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 DCUN1D5Q9BTE7 237 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 Q9N2K0 584 aa11.85□□□□□ -0.51
CLK3-223ENST00000568488 MRPS18AQ9NVS2 196 aaKnown RBP11.85□□□□□ -0.51
CLK3-223ENST00000568488 IGHV4-4A0A075B6R2 117 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 TRBV6-6A0A0A6YYG2 114 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 OR4C46A6NHA9 309 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 ALPLP05186 524 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 CD3GP09693 182 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 UBBP0CG47 229 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 TPBGQ13641 420 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 ZNF124Q15973 351 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 NKAIN3Q8N8D7 197 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 GGHQ92820 318 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 KCNK15Q9H427 330 aa11.84□□□□□ -0.51
CLK3-223ENST00000568488 FGF20Q9NP95 211 aaPredicted RBP11.84□□□□□ -0.51
CLK3-223ENST00000568488 RBM7Q9Y580 266 aaKnown RBP11.84□□□□□ -0.51
CLK3-223ENST00000568488 PNMA8CA0A1B0GUJ8 204 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 SAA1P0DJI8 122 aaPredicted RBP11.83□□□□□ -0.52
CLK3-223ENST00000568488 MYOD1P15172 320 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 RPA2P15927 270 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 GALP22466 123 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 ELLP55199 621 aaPredicted RBP11.83□□□□□ -0.52
CLK3-223ENST00000568488 CDK10Q15131 360 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 C5orf30Q96GV9 206 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 FANCD2OSQ96PS1 177 aa11.83□□□□□ -0.52
CLK3-223ENST00000568488 NPIPB5A8MRT5 1133 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 TEX22C9J3V5 150 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 EI24O14681 340 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 BET1O15155 118 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 SOCS1O15524 211 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 GPR183P32249 361 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 PLET1Q6UQ28 207 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 CENPSQ8N2Z9 138 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 POM121L12Q8N7R1 296 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 OR6M1Q8NGM8 313 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 OSR1Q8TAX0 266 aaPredicted RBP11.82□□□□□ -0.52
CLK3-223ENST00000568488 PGLYRP3Q96LB9 341 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 DERL3Q96Q80 235 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 TM2D1Q9BX74 207 aa11.82□□□□□ -0.52
CLK3-223ENST00000568488 A0A0A6YYD4 124 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 TRBV7-1A0A0A6YYK4 115 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 TRAV10A0A0B4J240 114 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 MFSD2BA6NFX1 497 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 TRDCB7Z8K6 153 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 DHFRP00374 187 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 IL6RP08887 468 aaPredicted RBP11.81□□□□□ -0.52
CLK3-223ENST00000568488 DEFA4P12838 97 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 SRMP19623 302 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 HLA-DMBP28068 263 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 ADMP35318 185 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 SLC7A6OSQ96CW6 309 aaPredicted RBP11.81□□□□□ -0.52
CLK3-223ENST00000568488 C12orf4Q9NQ89 552 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 CLEC2DQ9UHP7 191 aa11.81□□□□□ -0.52
CLK3-223ENST00000568488 LRP1BQ9NZR2 4599 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 CA1P00915 261 aaPredicted RBP11.8□□□□□ -0.52
CLK3-223ENST00000568488 REG1AP05451 166 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 CTSDP07339 412 aaPredicted RBP11.8□□□□□ -0.52
CLK3-223ENST00000568488 DCKP27707 260 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 DUTP33316 252 aaKnown RBP11.8□□□□□ -0.52
CLK3-223ENST00000568488 RPL27AP46776 148 aaKnown RBP11.8□□□□□ -0.52
CLK3-223ENST00000568488 SERPINB10P48595 397 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 UNC119Q13432 240 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 TMEM187Q14656 261 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 SMN1Q16637 294 aaKnown RBP11.8□□□□□ -0.52
CLK3-223ENST00000568488 PVRIGQ6DKI7 326 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 Q6ZTC4 211 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 ADTRPQ96IZ2 230 aa11.8□□□□□ -0.52
CLK3-223ENST00000568488 CXorf58Q96LI9 332 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms