RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MRPS11P82912 194 aaKnown RBP16.67■□□□□ 0.26
CLN3-230ENST00000568076 TFF3Q07654 80 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 ZNF787Q6DD87 383 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 ACSM6Q6P461 480 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 OR4A16Q8NH70 328 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 GNG13Q9P2W3 67 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 RPUSD1Q9UJJ7 312 aaKnown RBP16.67■□□□□ 0.26
CLN3-230ENST00000568076 ROS1P08922 2347 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 LOC102723971A0A1B0GUV8 181 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 E7EQL1 145 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 TMEM178BH3BS89 294 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 EIF3GO75821 320 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLN3-230ENST00000568076 SPCS3P61009 180 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 ERVK-16P61578 105 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 FAM122CQ6P4D5 195 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 RPP25LQ8N5L8 163 aaKnown RBP16.66■□□□□ 0.26
CLN3-230ENST00000568076 CYB561D1Q8N8Q1 229 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 OR4S2Q8NH73 311 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 RAXQ9Y2V3 346 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 PUS1Q9Y606 427 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLN3-230ENST00000568076 TRAV38-1A0A0B4J264 116 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 TRGV8A0A0C4DH27 118 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 NKX6-3A6NJ46 265 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 ARG1P05089 322 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 MDKP21741 143 aaPredicted RBP16.66■□□□□ 0.26
CLN3-230ENST00000568076 FGF7P21781 194 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 PDLIM3Q53GG5 364 aaPredicted RBP16.66■□□□□ 0.26
CLN3-230ENST00000568076 KHDC3LQ587J8 217 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 NCMAPQ5T1S8 102 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 OR52E5Q8NH55 327 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 RNASE6Q93091 150 aaKnown RBP16.66■□□□□ 0.26
CLN3-230ENST00000568076 ZNRD1Q9P1U0 126 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 SLC25A10Q9UBX3 287 aaPredicted RBP16.66■□□□□ 0.26
CLN3-230ENST00000568076 LINC00312Q9Y6C7 94 aa16.66■□□□□ 0.26
CLN3-230ENST00000568076 hADV38S2A0JD32 116 aa16.65■□□□□ 0.26
CLN3-230ENST00000568076 GFRA3O60609 400 aa16.65■□□□□ 0.26
CLN3-230ENST00000568076 VDAC2P45880 294 aaPredicted RBP16.65■□□□□ 0.26
CLN3-230ENST00000568076 CEBPGP53567 150 aa16.65■□□□□ 0.26
CLN3-230ENST00000568076 ZCCHC14Q8WYQ9 949 aaKnown RBP16.65■□□□□ 0.26
CLN3-230ENST00000568076 CCL17Q92583 94 aa16.65■□□□□ 0.26
CLN3-230ENST00000568076 EGLN1Q9GZT9 426 aa16.65■□□□□ 0.26
CLN3-230ENST00000568076 CRYBA1P05813 215 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 PAX6P26367 422 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 THBS3P49746 956 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 SLC25A48Q6ZT89 311 aaKnown RBP16.64■□□□□ 0.25
CLN3-230ENST00000568076 NPCDR1Q9BY65 106 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 PPIAL4EA0A075B759 164 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 ZFP92A6NM28 416 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 PPIAL4DF5H284 164 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 PPIAL4FP0DN26 164 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 CTRB1P17538 263 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 FLI1Q01543 452 aaPredicted RBP16.64■□□□□ 0.25
CLN3-230ENST00000568076 RHEBQ15382 184 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 CTRB2Q6GPI1 263 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 C15orf54Q8N8G6 183 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 ISOC2Q96AB3 205 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 TMEM106BQ9NUM4 274 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 PPIAL4AQ9Y536 164 aa16.64■□□□□ 0.25
CLN3-230ENST00000568076 MAP1LC3B2A6NCE7 125 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 H3BQ15 152 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 TNFRSF13BO14836 293 aaPredicted RBP16.63■□□□□ 0.25
CLN3-230ENST00000568076 BCL2P10415 239 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 ZNF429Q86V71 674 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 C1orf87Q8N0U7 546 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 RHOVQ96L33 236 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 MAP1LC3BQ9GZQ8 125 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 UNKLQ9H9P5 680 aaKnown RBP16.63■□□□□ 0.25
CLN3-230ENST00000568076 NGBQ9NPG2 151 aa16.63■□□□□ 0.25
CLN3-230ENST00000568076 CISD1Q9NZ45 108 aaKnown RBP16.63■□□□□ 0.25
CLN3-230ENST00000568076 RPL31P62899 125 aaKnown RBP16.62■□□□□ 0.25
CLN3-230ENST00000568076 TMEM30BQ3MIR4 351 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 OR4A47Q6IF82 309 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 LYPD2Q6UXB3 125 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 Q8N7P7 452 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 TUBA4BQ9H853 241 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 MLXQ9UH92 298 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 TCF19Q9Y242 345 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 TET2Q6N021 2002 aaPredicted RBP16.62■□□□□ 0.25
CLN3-230ENST00000568076 C15orf61A6NNL5 157 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 RRHO14718 337 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 CT45A6P0DMU7 189 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 CT45A5P0DMU8 189 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 CT45A7P0DMV0 189 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 CCL3L1P16619 93 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 TMEM170AQ8WVE7 144 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 HIST1H2BAQ96A08 127 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 ADTRPQ96IZ2 230 aa16.62■□□□□ 0.25
CLN3-230ENST00000568076 A0A1W2PPE2 198 aa16.61■□□□□ 0.25
CLN3-230ENST00000568076 VSTM5A8MXK1 200 aa16.61■□□□□ 0.25
CLN3-230ENST00000568076 IFNA10P01566 189 aa16.61■□□□□ 0.25
CLN3-230ENST00000568076 MEF2CQ06413 473 aaPredicted RBP16.61■□□□□ 0.25
CLN3-230ENST00000568076 AVPI1Q5T686 147 aa16.61■□□□□ 0.25
CLN3-230ENST00000568076 HEYLQ9NQ87 328 aaPredicted RBP16.61■□□□□ 0.25
CLN3-230ENST00000568076 SLC39A9Q9NUM3 307 aa16.61■□□□□ 0.25
CLN3-230ENST00000568076 PRSS46E5RG02 174 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 LY86O95711 162 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 FFAR4Q5NUL3 377 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 TMEM200BQ69YZ2 307 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 ABHD12Q8N2K0 398 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 OR10G4Q8NGN3 311 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms