RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CASTOR1Q8WTX7 329 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 TCTEX1D2Q8WW35 142 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 SNAPC3Q92966 411 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 RHOVQ96L33 236 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 MS4A10Q96PG2 267 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 C13orf42A0A1B0GVH6 325 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 MSGN1A6NI15 193 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 HSPB1P04792 205 aaKnown RBP14.48□□□□□ -0.09
CLN3-227ENST00000567495 SAA1P0DJI8 122 aaPredicted RBP14.48□□□□□ -0.09
CLN3-227ENST00000567495 PRSS3P35030 304 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 RORCP51449 518 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 VBP1P61758 197 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 RPL30P62888 115 aaKnown RBP14.48□□□□□ -0.09
CLN3-227ENST00000567495 ASPHD1Q5U4P2 390 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 ANKRD13BQ86YJ7 626 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 OR5T1Q8NG75 326 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 SECTM1Q8WVN6 248 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 SPIN2AQ99865 258 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 SPIN2BQ9BPZ2 258 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 TAS2R8Q9NYW2 309 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 ANAPC10Q9UM13 185 aa14.48□□□□□ -0.09
CLN3-227ENST00000567495 WI2-2373I1.2A0A1W2PRP0 233 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 OVOL1O14753 267 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 RBFOX2O43251 390 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLN3-227ENST00000567495 HRASP01112 189 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 PTHLHP12272 177 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 HERV-K104P61576 105 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 TNXAQ16473 311 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 MRGPRG-AS1Q2M3A8 158 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 DHRS11Q6UWP2 260 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 IDO2Q6ZQW0 420 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 ZNF429Q86V71 674 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 SRSF12Q8WXF0 261 aaKnown RBP14.47□□□□□ -0.09
CLN3-227ENST00000567495 AP3S1Q92572 193 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 USMG5Q96IX5 58 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 PHB2Q99623 299 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 SLC5A7Q9GZV3 580 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 COMMD3Q9UBI1 195 aa14.47□□□□□ -0.09
CLN3-227ENST00000567495 OR2A4O95047 310 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 GABARAPO95166 117 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 SMIM18P0DKX4 95 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 NAT1P18440 290 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 CATR1Q13166 79 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 DEFB121Q5J5C9 76 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 OR2B11Q5JQS5 317 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 MZT2AQ6P582 158 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 CD300LFQ8TDQ1 290 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 DCUN1D4Q92564 292 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 OR2A7Q96R45 310 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 TINAGL1Q9GZM7 467 aaPredicted RBP14.46□□□□□ -0.09
CLN3-227ENST00000567495 ALX4Q9H161 411 aaPredicted RBP14.46□□□□□ -0.09
CLN3-227ENST00000567495 ZNF430Q9H8G1 570 aaPredicted RBP14.46□□□□□ -0.09
CLN3-227ENST00000567495 SCPEP1Q9HB40 452 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 RANGRFQ9HD47 186 aaPredicted RBP14.46□□□□□ -0.09
CLN3-227ENST00000567495 CCL28Q9NRJ3 127 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 EHFQ9NZC4 300 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 SCOCQ9UIL1 159 aa14.46□□□□□ -0.09
CLN3-227ENST00000567495 MPPED1O15442 326 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 IGHV3-11P01762 117 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 FCER2P06734 321 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 OR9G9P0C7N8 305 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 ZP3P21754 424 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 MAS1LP35410 378 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 DYRK1AQ13627 763 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 OR5H2Q8NGV7 314 aa14.45□□□□□ -0.1
CLN3-227ENST00000567495 MRPS26Q9BYN8 205 aaKnown RBP14.45□□□□□ -0.1
CLN3-227ENST00000567495 DNAH3Q8TD57 4116 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 MEIS3P1A6NDR6 274 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 EIF4EP06730 217 aaKnown RBP14.44□□□□□ -0.1
CLN3-227ENST00000567495 FXYD4P59646 89 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 CTF1Q16619 201 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 SLC25A42Q86VD7 318 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 ADAD2Q8NCV1 583 aaKnown RBP14.44□□□□□ -0.1
CLN3-227ENST00000567495 TMEM167AQ8TBQ9 72 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 DLX4Q92988 240 aaPredicted RBP14.44□□□□□ -0.1
CLN3-227ENST00000567495 COA4Q9NYJ1 87 aa14.44□□□□□ -0.1
CLN3-227ENST00000567495 IGHV4OR15-8A0A075B7B6 117 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 A0A087WW49 117 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 SULT1C2O00338 296 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 KBTBD11O94819 623 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 ECI1P42126 302 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 BRWD1-AS2P59051 145 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 SPAG16Q8N0X2 631 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 PUSL1Q8N0Z8 303 aaKnown RBP14.43□□□□□ -0.1
CLN3-227ENST00000567495 OR6F1Q8NGZ6 308 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 OR4A5Q8NH83 315 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 GPX8Q8TED1 209 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 MOB3AQ96BX8 217 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 ADAM30Q9UKF2 790 aa14.43□□□□□ -0.1
CLN3-227ENST00000567495 FAM223BA6NKX1 122 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 TNFSF12O43508 249 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 TPPPO94811 219 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 ZNF182P17025 639 aaPredicted RBP14.42□□□□□ -0.1
CLN3-227ENST00000567495 RFX2P48378 723 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 SLURP1P55000 103 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 TAS2R31P59538 309 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 GPR107Q5VW38 600 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 GPR141Q7Z602 305 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 TMEM17Q86X19 198 aa14.42□□□□□ -0.1
CLN3-227ENST00000567495 FAM223AQ8IWN6 122 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms