RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SLC25A22Q9H936 323 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 CHODLQ9H9P2 273 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 ENY2Q9NPA8 101 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 JKAMPQ9P055 326 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 RPUSD1Q9UJJ7 312 aaKnown RBP5.16□□□□□ -1.58
CLN3-223ENST00000566472 PRNDQ9UKY0 176 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 ZNF835Q9Y2P0 537 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 ZNF257Q9Y2Q1 563 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 LINC00312Q9Y6C7 94 aa5.16□□□□□ -1.58
CLN3-223ENST00000566472 SAA2-SAA4A0A096LPE2 208 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 TRAV38-1A0A0B4J264 116 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 A0A0G2JNJ9 132 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 C17orf100A8MU93 164 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 F6UZH7 168 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SLC31A2O15432 143 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 PDE6DO43924 150 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 VENTXO95231 258 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 IFNA10P01566 189 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 IL6RP08887 468 aaPredicted RBP5.15□□□□□ -1.59
CLN3-223ENST00000566472 FBP1P09467 338 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SAA2P0DJI9 122 aaPredicted RBP5.15□□□□□ -1.59
CLN3-223ENST00000566472 BMP5P22003 454 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 NPY1RP25929 384 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 RPS10P46783 165 aaKnown RBP5.15□□□□□ -1.59
CLN3-223ENST00000566472 ZNF134P52741 427 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 CD81P60033 236 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SNRPEP62304 92 aaKnown RBP5.15□□□□□ -1.59
CLN3-223ENST00000566472 TLE1Q04724 770 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 RBPJQ06330 500 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 FAM27E3Q08E93 113 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SSX2Q16385 188 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 RTL8BQ17RB0 113 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 TMEM241Q24JQ0 296 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SPRNQ5BIV9 151 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 ADAM5Q6NVV9 412 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 DOLPP1Q86YN1 238 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 CISD2Q8N5K1 135 aaKnown RBP5.15□□□□□ -1.59
CLN3-223ENST00000566472 Q8N7P7 452 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SLC24A4Q8NFF2 622 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 Q8WTZ3 238 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 RAB24Q969Q5 203 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 ANAPC16Q96DE5 110 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 BTF3L4Q96K17 158 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 C12orf57Q99622 126 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SSX3Q99909 188 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 SMIM7Q9BQ49 75 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 NGBQ9NPG2 151 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 HEYLQ9NQ87 328 aaPredicted RBP5.15□□□□□ -1.59
CLN3-223ENST00000566472 TMEM14BQ9NUH8 114 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 FKBP11Q9NYL4 201 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 BET1LQ9NYM9 111 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 Q9UFV3 132 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 DOCK7Q96N67 2140 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 PTPRBP23467 1997 aa5.15□□□□□ -1.59
CLN3-223ENST00000566472 PCNX2A6NKB5 2137 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ELOA3CA0A087WX78 387 aaPredicted RBP5.14□□□□□ -1.59
CLN3-223ENST00000566472 INS-IGF2F8WCM5 200 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 K7EM74 188 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 UPK2O00526 184 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 TMPRSS2O15393 492 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 EIF3GO75821 320 aaKnown RBP eCLIP5.14□□□□□ -1.59
CLN3-223ENST00000566472 APOA2P02652 100 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 CXCL1P09341 107 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 STAG3L2P0CL84 134 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 STAG3L3P0CL85 134 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 HOXA5P20719 270 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 S100PP25815 95 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 PRCDQ00LT1 54 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 FABP9Q0Z7S8 132 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 RAB31Q13636 194 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 KIAA0141Q14154 515 aaPredicted RBP5.14□□□□□ -1.59
CLN3-223ENST00000566472 ADIPOQQ15848 244 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ZNF674Q2M3X9 581 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 BSXQ3C1V8 233 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 OR4A47Q6IF82 309 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ALKBH2Q6NS38 261 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 TREML4Q6UXN2 200 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 GFRALQ6UXV0 394 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ZNF833PQ6ZTB9 187 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 SSX9Q7RTT3 188 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ASCL5Q7RTU5 278 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 WFDC8Q8IUA0 241 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 TGIF2LYQ8IUE0 185 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 IQCF2Q8IXL9 164 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 LYG1Q8N1E2 194 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 LINC00311Q8N616 119 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ZNF383Q8NA42 475 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 Q8NA96 180 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 OR4A5Q8NH83 315 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 OSR1Q8TAX0 266 aaPredicted RBP5.14□□□□□ -1.59
CLN3-223ENST00000566472 NANPQ8TBE9 248 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ZNF596Q8TC21 504 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ABHD17AQ96GS6 310 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 FAM210BQ96KR6 192 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 RHOVQ96L33 236 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 CCL13Q99616 98 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 PYGO2Q9BRQ0 406 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 GGTLC1Q9BX51 225 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 PARLQ9H300 379 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 TMPRSS5Q9H3S3 457 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms