RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TMEM177Q53S58 311 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 GPR157Q5UAW9 335 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 RUSC1-AS1Q66K80 236 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 Q6ZRM9 215 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 DYNAPQ8N1N2 210 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 OR4D5Q8NGN0 318 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 OSR1Q8TAX0 266 aaPredicted RBP24.66■■□□□ 1.54
CTCF-203ENST00000566078 FLYWCH2Q96CP2 140 aaKnown RBP24.66■■□□□ 1.54
CTCF-203ENST00000566078 HARBI1Q96MB7 349 aa24.66■■□□□ 1.54
CTCF-203ENST00000566078 FLNAP21333 2647 aaKnown RBP24.65■■□□□ 1.54
CTCF-203ENST00000566078 OOSP1A8MZH6 123 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 TIMM23O14925 209 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 SHOXO15266 292 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 PSMB6P28072 239 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 NKX2-5P52952 324 aaPredicted RBP24.65■■□□□ 1.54
CTCF-203ENST00000566078 RAB32Q13637 225 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 CYB5R2Q6BCY4 276 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 PIP4P2Q8N4L2 257 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 OR1S1Q8NH92 325 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 ZNF469Q96JG9 3925 aaPredicted RBP24.65■■□□□ 1.54
CTCF-203ENST00000566078 TET2Q6N021 2002 aaPredicted RBP24.65■■□□□ 1.54
CTCF-203ENST00000566078 CELSR1Q9NYQ6 3014 aa24.65■■□□□ 1.54
CTCF-203ENST00000566078 SMAD7O15105 426 aaKnown RBP24.64■■□□□ 1.54
CTCF-203ENST00000566078 MPC2O95563 127 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 AVPP01185 164 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 IGHV4-38-2P0DP08 117 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 CCDC144NLQ6NUI1 221 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 OR11H4Q8NGC9 324 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 OR4C13Q8NGP0 309 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 SVEP1Q4LDE5 3571 aa24.64■■□□□ 1.54
CTCF-203ENST00000566078 ABCA1O95477 2261 aa24.64■■□□□ 1.53
CTCF-203ENST00000566078 FOXRED2Q8IWF2 684 aa24.64■■□□□ 1.53
CTCF-203ENST00000566078 MALSU1Q96EH3 234 aa24.64■■□□□ 1.53
CTCF-203ENST00000566078 RHOVQ96L33 236 aa24.64■■□□□ 1.53
CTCF-203ENST00000566078 TMEM140Q9NV12 185 aa24.64■■□□□ 1.53
CTCF-203ENST00000566078 ITGB1BP2Q9UKP3 347 aa24.64■■□□□ 1.53
CTCF-203ENST00000566078 CFHR4Q92496 578 aa24.63■■□□□ 1.53
CTCF-203ENST00000566078 AJUBAQ96IF1 538 aa24.63■■□□□ 1.53
CTCF-203ENST00000566078 PITX3O75364 302 aa24.62■■□□□ 1.53
CTCF-203ENST00000566078 NXPH3O95157 252 aa24.62■■□□□ 1.53
CTCF-203ENST00000566078 MBPP02686 304 aaPredicted RBP24.62■■□□□ 1.53
CTCF-203ENST00000566078 RPS16P62249 146 aaKnown RBP24.62■■□□□ 1.53
CTCF-203ENST00000566078 POU2AF1Q16633 256 aa24.62■■□□□ 1.53
CTCF-203ENST00000566078 BRD3OSQ6XYD6 125 aa24.62■■□□□ 1.53
CTCF-203ENST00000566078 HYLS1Q96M11 299 aa24.62■■□□□ 1.53
CTCF-203ENST00000566078 MS4A7Q9GZW8 240 aaPredicted RBP24.62■■□□□ 1.53
CTCF-203ENST00000566078 LSM5Q9Y4Y9 91 aaKnown RBP24.62■■□□□ 1.53
CTCF-203ENST00000566078 SRRM4A7MD48 611 aaKnown RBP24.61■■□□□ 1.53
CTCF-203ENST00000566078 OR9G9P0C7N8 305 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 OR4A47Q6IF82 309 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 COA4Q9NYJ1 87 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 FXYD6-FXYD2A0A087WZ82 144 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 NKX2-1P43699 371 aaPredicted RBP24.61■■□□□ 1.53
CTCF-203ENST00000566078 C11orf87Q6NUJ2 197 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 GRPEL2Q8TAA5 225 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 THAP6Q8TBB0 222 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 AIFM2Q9BRQ8 373 aa24.61■■□□□ 1.53
CTCF-203ENST00000566078 TEX15Q9BXT5 2789 aa24.6■■□□□ 1.53
CTCF-203ENST00000566078 PET100P0DJ07 73 aa24.6■■□□□ 1.53
CTCF-203ENST00000566078 CD1BP29016 333 aa24.6■■□□□ 1.53
CTCF-203ENST00000566078 HABP2Q14520 560 aaPredicted RBP24.6■■□□□ 1.53
CTCF-203ENST00000566078 CXorf66Q5JRM2 361 aaPredicted RBP24.6■■□□□ 1.53
CTCF-203ENST00000566078 KLF17Q5JT82 389 aaPredicted RBP24.6■■□□□ 1.53
CTCF-203ENST00000566078 MBD2Q9UBB5 411 aa24.6■■□□□ 1.53
CTCF-203ENST00000566078 NSG2Q9Y328 171 aa24.6■■□□□ 1.53
CTCF-203ENST00000566078 FAM90A9PA6NNJ1 464 aa24.59■■□□□ 1.53
CTCF-203ENST00000566078 K7EPK0 472 aa24.59■■□□□ 1.53
CTCF-203ENST00000566078 VENTXO95231 258 aa24.59■■□□□ 1.53
CTCF-203ENST00000566078 SAA1P0DJI8 122 aaPredicted RBP24.59■■□□□ 1.53
CTCF-203ENST00000566078 FAM71E2Q8N5Q1 922 aa24.59■■□□□ 1.53
CTCF-203ENST00000566078 RITA1Q96K30 269 aa24.59■■□□□ 1.53
CTCF-203ENST00000566078 POMT1Q9Y6A1 747 aa24.59■■□□□ 1.53
CTCF-203ENST00000566078 ST8SIA3O43173 380 aa24.58■■□□□ 1.53
CTCF-203ENST00000566078 OR2B8PP59922 312 aa24.58■■□□□ 1.53
CTCF-203ENST00000566078 CTNNBIP1Q9NSA3 81 aaPredicted RBP24.58■■□□□ 1.53
CTCF-203ENST00000566078 TRAV3A0A0B4J244 114 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 H0YIZ8 118 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 RBMXL2O75526 392 aaKnown RBP24.57■■□□□ 1.52
CTCF-203ENST00000566078 SLC25A4P12235 298 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 ARHGDIBP52566 201 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 PRSS54Q6PEW0 395 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 OR4A16Q8NH70 328 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 MAGT1Q9H0U3 335 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 ZFP57Q9NU63 452 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 OR5AC2Q9NZP5 309 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 IGKV1D-33P01593 117 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 IGKV1-33P01594 117 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 IGLV2-23P01705 113 aa24.57■■□□□ 1.52
CTCF-203ENST00000566078 RCL1Q9Y2P8 373 aaKnown RBP24.57■■□□□ 1.52
CTCF-203ENST00000566078 MYO9AB2RTY4 2548 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 DEDDO75618 318 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 CD24P25063 80 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 RELBQ01201 579 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 ID3Q02535 119 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 PUSL1Q8N0Z8 303 aaKnown RBP24.56■■□□□ 1.52
CTCF-203ENST00000566078 RNF126Q9BV68 326 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 BET1LQ9NYM9 111 aa24.56■■□□□ 1.52
CTCF-203ENST00000566078 SNRNP70P08621 437 aaKnown RBP24.55■■□□□ 1.52
CTCF-203ENST00000566078 LGALS7P47929 136 aa24.55■■□□□ 1.52
CTCF-203ENST00000566078 POLR2GP62487 172 aaKnown RBP eCLIP24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms