RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, human

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-215	ENST00000564353	LBH	Q53QV2	105 aa	Predicted RBP	11.23	□□□□□ -0.61
CLK3-215	ENST00000564353	RAB24	Q969Q5	203 aa		11.23	□□□□□ -0.61
CLK3-215	ENST00000564353	LOXL4	Q96JB6	756 aa		11.23	□□□□□ -0.61
CLK3-215	ENST00000564353	IGHV1-18	A0A0C4DH31	117 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	MEF2B	Q02080	365 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	C1orf87	Q8N0U7	546 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	WFIKKN1	Q96NZ8	548 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	CXXC4	Q9H2H0	198 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	ZNRD1	Q9P1U0	126 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	RNF212B	A8MTL3	300 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	CLDN34	H7C241	214 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353		M0R1X1	148 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	IFNA10	P01566	189 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	ZNF134	P52741	427 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	PKIA	P61925	76 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	CATR1	Q13166	79 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	MSMO1	Q15800	293 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	INO80C	Q6PI98	192 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	MRGPRG	Q86SM5	289 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	ABHD12	Q8N2K0	398 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	MBD3L1	Q8WWY6	194 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	DERL1	Q9BUN8	251 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	HINT2	Q9BX68	163 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	NPCDR1	Q9BY65	106 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	GAR1	Q9NY12	217 aa	Known RBP	11.22	□□□□□ -0.61
CLK3-215	ENST00000564353		A0A1W2PPQ1	181 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353		M0R1B8	84 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	PRDX2	P32119	198 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	GPR12	P47775	334 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	SERF2	P84101	59 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	CST9LP1	Q5W188	147 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	DPPA3	Q6W0C5	159 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	MOGAT3	Q86VF5	341 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	TGIF2LY	Q8IUE0	185 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	TAAR6	Q96RI8	345 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	PSMG3	Q9BT73	122 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	PARL	Q9H300	379 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	HES4	Q9HCC6	221 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	LAMP3	Q9UQV4	416 aa		11.22	□□□□□ -0.61
CLK3-215	ENST00000564353	TACC2	O95359	2948 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	ZNF292	O60281	2723 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353		A0A087WWC5	75 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	TRAV1-1	A0A0B4J248	108 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	IGHV2OR16-5	A0A0B4J2B6	119 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	CYB5R3	P00387	301 aa	Predicted RBP	11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	IGKV3-15	P01624	115 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	CHRNA7	P36544	502 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	CDX1	P47902	265 aa	Predicted RBP	11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	SNIP1	Q8TAD8	396 aa	Known RBP	11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	R3HDM4	Q96D70	268 aa		11.21	□□□□□ -0.61
CLK3-215	ENST00000564353	IGKV1D-17	A0A075B6S4	117 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353		A0A0U1RQK1	487 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	PMS2P5	A8MQ11	134 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	RRH	O14718	337 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	PPP1R2P9	O14990	202 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	GZMH	P20718	246 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	DMRTA1	Q5VZB9	504 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	SLC35E4	Q6ICL7	350 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	ZNF709	Q8N972	641 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353		Q8TCH9	128 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	SSMEM1	Q8WWF3	244 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	SNRNP40	Q96DI7	357 aa	Known RBP	11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	FAM122A	Q96E09	287 aa		11.21	□□□□□ -0.62
CLK3-215	ENST00000564353	ARFGEF3	Q5TH69	2177 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	IFNL4	K9M1U5	179 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	PSMB3	P49720	205 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	FAM3B	P58499	235 aa	Predicted RBP	11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	ZNF718	Q3SXZ3	478 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	PRAMEF5	Q5TYX0	476 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	C1QL4	Q86Z23	238 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	AGMAT	Q9BSE5	352 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	PCGF1	Q9BSM1	259 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	PARD6A	Q9NPB6	346 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	PLCE1	Q9P212	2302 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	PCNX1	Q96RV3	2341 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	MAS1L	P35410	378 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	ATP5G3	P48201	142 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	SMIM21	Q3B7S5	101 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	TMEM147	Q9BVK8	224 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	BSN	Q9UPA5	3926 aa		11.2	□□□□□ -0.62
CLK3-215	ENST00000564353	TMEM210	A6NLX4	147 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	SPINT2	O43291	252 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	RPL23	P62829	140 aa	Known RBP	11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	EIF4EBP1	Q13541	118 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	TMEM241	Q24JQ0	296 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	OR2V2	Q96R30	315 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	HEYL	Q9NQ87	328 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	SVEP1	Q4LDE5	3571 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	CLDN14	O95500	239 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	IFNA1	P01562	189 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	FTH1P19	P0C7X4	201 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	NPPC	P23582	126 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	S100A7	P31151	101 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	P2RY6	Q15077	328 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	BSX	Q3C1V8	233 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	C22orf34	Q6ZV56	151 aa		11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	ZCCHC24	Q8N2G6	241 aa	Known RBP	11.19	□□□□□ -0.62
CLK3-215	ENST00000564353	PINX1	Q96BK5	328 aa	Known RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms