RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TDRG1Q3Y452 100 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 TTC32Q5I0X7 151 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 C1orf189Q5VU69 101 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 EPGNQ6UW88 154 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 TMEM64Q6YI46 380 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 Q6ZN92 141 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 ZNF534Q76KX8 674 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 SLC22A18ASQ8N1D0 253 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 KCNRGQ8N5I3 272 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 ZFP62Q8NB50 900 aaPredicted RBP4.13□□□□□ -1.75
VPS35-205ENST00000563984 KLHDC9Q8NEP7 349 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 OR51E1Q8TCB6 317 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 TWIST2Q8WVJ9 160 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 C9orf85Q96MD7 179 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 TMEM59Q9BXS4 323 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 ZNF665Q9H7R5 613 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 REEP1Q9H902 201 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 NPVFQ9HCQ7 196 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 TMEM9BQ9NQ34 198 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 EXOSC3Q9NQT5 275 aaKnown RBP4.13□□□□□ -1.75
VPS35-205ENST00000563984 LAMTOR3Q9UHA4 124 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 MED31Q9Y3C7 131 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 IQGAP1P46940 1657 aa4.13□□□□□ -1.75
VPS35-205ENST00000563984 CRB1P82279 1406 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 TMED7-TICAM2A0A0A6YYA0 188 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 A0A1W2PP11 408 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 KANTRA0A1W2PQU2 76 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 OR51F1A6NGY5 319 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 LYRM9A8MSI8 78 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 BTNL10A8MVZ5 291 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 CCDC179H3BU77 68 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 K7ENP7 123 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 K7EQS6 105 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 M0R1X1 148 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 PIRO00625 290 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 WNT9BO14905 357 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 CXCL13O43927 109 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 TNFP01375 233 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 IGLC6P0CF74 106 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 IGHV4-30-4P0DP06 118 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 IFITM1P13164 125 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 CPMP14384 443 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 CRYBB3P26998 211 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SFTPDP35247 375 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SRP14P37108 136 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 NDUFV3P56181 108 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 FBXW4P57775 412 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 OR1D5P58170 312 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 LSM3P62310 102 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 TAF10Q12962 218 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 ENDOGQ14249 297 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 HES1Q14469 280 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 ADIRFQ15847 76 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 ZNF79Q15937 498 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 IBA57Q5T440 356 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 GFI1BQ5VTD9 330 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 HRCT1Q6UXD1 115 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 CEACAM19Q7Z692 300 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 GAPTQ8N292 157 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 RFLNBQ8N5W9 214 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 ZNF555Q8NEP9 628 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 OR51G1Q8NGK1 321 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 C8orf46Q8TAG6 207 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 POP5Q969H6 163 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 TMEM54Q969K7 222 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SDF2Q99470 211 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SPIN2AQ99865 258 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SPIN2BQ9BPZ2 258 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SNRNP25Q9BV90 132 aaKnown RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 TMEM191AQ9H0A3 160 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 POMKQ9H5K3 350 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 JPT2Q9H910 190 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 PARP11Q9NR21 331 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 SDR39U1Q9NRG7 319 aaPredicted RBP4.12□□□□□ -1.75
VPS35-205ENST00000563984 FUT9Q9Y231 359 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 ADGBQ8N7X0 1667 aa4.12□□□□□ -1.75
VPS35-205ENST00000563984 RALGAPBQ86X10 1494 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 NRKQ7Z2Y5 1582 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 DEPDC5O75140 1603 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 GCC2Q8IWJ2 1684 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 TRGV10A0A0A0MS01 117 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 FAM240AA0A1B0GVK7 77 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 ODAMA1E959 279 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 OR2M5A3KFT3 312 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 C5orf49A4QMS7 147 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 ZNF670-ZNF695F2Z2N8 137 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 TMEM178BH3BS89 294 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 OVOL1O14753 267 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 ARPC2O15144 300 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 NCR2O95944 276 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 TBX6O95947 436 aaPredicted RBP4.11□□□□□ -1.75
VPS35-205ENST00000563984 IGKV3-20P01619 116 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 IGLC2P0DOY2 106 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 IGLC3P0DOY3 106 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 BCKDHAP12694 445 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 PSMB9P28065 219 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 KIR2DS2P43631 304 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 MARCKSL1P49006 195 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 RND3P61587 244 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 SLC38A11Q08AI6 406 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms