RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SLC25A4P12235 298 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 HAGHQ16775 308 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 FOXL2NBQ6ZUU3 175 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 SLC35E3Q7Z769 313 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 SLC25A42Q86VD7 318 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 ZNF485Q8NCK3 441 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 TMEM208Q9BTX3 173 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 TMEM147Q9BVK8 224 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 GPR132Q9UNW8 380 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 LAMA1P25391 3075 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 SHISA9B4DS77 424 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 JTBO76095 146 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 OR2A4O95047 310 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 IGLV1-44P01699 117 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 TRAPPC2P0DI81 140 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 TRAPPC2BP0DI82 140 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 LINC00205P59089 165 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 SLC51BQ86UW2 128 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 FAM169BQ8N8A8 192 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 OR2A7Q96R45 310 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 PUS1Q9Y606 427 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS39-205ENST00000562258 ATRQ13535 2644 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 PF4P02776 101 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 SRD5A1P18405 259 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 CSN1S1P47710 185 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 CR1LQ2VPA4 569 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 CYB5R2Q6BCY4 276 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 ZNF66Q6ZN08 573 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 DNM1P46Q6ZS02 220 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 VMO1Q7Z5L0 202 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 GFI1Q99684 422 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 TM2D1Q9BX74 207 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 A0A0A6YYD4 124 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 IGKV1D-13A0A0B4J2D9 117 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 IGKV1-13P0DP09 117 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 LFNGQ8NES3 379 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 EML5Q05BV3 1969 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 MSMBP08118 114 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 BPIFB3P59826 476 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 ZP1P60852 638 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 RHOBP62745 196 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 RUSC1-AS1Q66K80 236 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 ZNF324BQ6AW86 544 aaPredicted RBP7.67□□□□□ -1.18
VPS39-205ENST00000562258 C11orf87Q6NUJ2 197 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 BBC3Q96PG8 261 aaPredicted RBP7.67□□□□□ -1.18
VPS39-205ENST00000562258 C5orf66Q9H5L9 145 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 PLSCR3Q9NRY6 295 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 SELENOKQ9Y6D0 94 aa7.67□□□□□ -1.18
VPS39-205ENST00000562258 EIF3GO75821 320 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS39-205ENST00000562258 OR2J3O76001 311 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 KBTBD11O94819 623 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 S100A6P06703 90 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 SLC25A16P16260 332 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 TPPP2P59282 170 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 UBE2KP61086 200 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 EXOSC2Q13868 293 aaKnown RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 UHRF2Q96PU4 802 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 REG4Q9BYZ8 158 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 NPDC1Q9NQX5 325 aaPredicted RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 BEX4Q9NWD9 120 aaPredicted RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 CELSR3Q9NYQ7 3312 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 SAA2-SAA4A0A096LPE2 208 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 PLXNB1O43157 2135 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 MELTFP08582 738 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 SAA2P0DJI9 122 aaPredicted RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 CD37P11049 281 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 KIAA0141Q14154 515 aaPredicted RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 ZNF146Q15072 292 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 MORN2Q502X0 79 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 ETFRF1Q6IPR1 90 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 MMP26Q9NRE1 261 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 CACFD1Q9UGQ2 172 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 TIMM9Q9Y5J7 89 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 ZNF207O43670 478 aaKnown RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 TRGV3P03979 118 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 ACOT6Q3I5F7 207 aaPredicted RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 FFAR4Q5NUL3 377 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 PRR27Q6MZM9 219 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 BAP18Q8IXM2 172 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 Q8WTZ3 238 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 GPR146Q96CH1 333 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 RBM14Q96PK6 669 aaKnown RBP7.66□□□□□ -1.18
VPS39-205ENST00000562258 TP53RKQ96S44 253 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 TMEM222Q9H0R3 208 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 RHOFQ9HBH0 211 aa7.66□□□□□ -1.18
VPS39-205ENST00000562258 MSGN1A6NI15 193 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 F6UZH7 168 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 ALX3O95076 343 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 TAS2R45P59539 299 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 ZNF329Q86UD4 541 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 DUSP18Q8NEJ0 188 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 SLC24A4Q8NFF2 622 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 OR5R1Q8NH85 324 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 RNF141Q8WVD5 230 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 GNPNAT1Q96EK6 184 aaPredicted RBP7.65□□□□□ -1.18
VPS39-205ENST00000562258 RND2P52198 227 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 UBA52P62987 128 aaKnown RBP7.65□□□□□ -1.18
VPS39-205ENST00000562258 SPRNQ5BIV9 151 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 TMEM42Q69YG0 159 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 FAM53AQ6NSI3 398 aaPredicted RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms