RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 VWC2Q2TAL6 325 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 LRRC75BQ2VPJ9 315 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 TMEM177Q53S58 311 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 SPANXN5Q5MJ07 72 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 Q6ZRG5 221 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 CENPVQ7Z7K6 275 aaPredicted RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 OR1L6Q8NGR2 347 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 CACNG8Q8WXS5 425 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 LHX4Q969G2 390 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 CXorf58Q96LI9 332 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 SPOCK3Q9BQ16 436 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 TXNDC17Q9BRA2 123 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 C19orf24Q9BVV8 132 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 SEC11CQ9BY50 192 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 RBKSQ9H477 322 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 PLEKHA3Q9HB20 300 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 C19orf12Q9NSK7 152 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 KIAA1456Q9P272 454 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 PRELID1Q9Y255 219 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 PPIAL4CA0A0B4J2A2 164 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 A6NNC1 897 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 B8ZZF3 427 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 FBXO24O75426 580 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 SCGB2A1O75556 95 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 ACTL6BO94805 426 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 SNAPINO95295 136 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 CRYZL1O95825 349 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 MT-CO2P00403 227 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 H2AFB1P0C5Y9 115 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 PPIAL4GP0DN37 164 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 ATP6V0CP27449 155 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 DSCR9P59020 149 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 RPL30P62888 115 aaKnown RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 PRCDQ00LT1 54 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 NHLH2Q02577 135 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 ZNF616Q08AN1 781 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 CLINT1Q14677 625 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 LTC4SQ16873 150 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 MINOS1Q5TGZ0 78 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 WDR25Q64LD2 544 aaPredicted RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 ETFRF1Q6IPR1 90 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 BTNL3Q6UXE8 466 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 RBMS3Q6XE24 437 aaKnown RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 TCF23Q7RTU1 214 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 S100A7AQ86SG5 101 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 ABHD12Q8N2K0 398 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 TEX45Q8NA69 505 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 LY6G5BQ8NDX9 201 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 OR1L8Q8NGR8 309 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 NANPQ8TBE9 248 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 C22orf15Q8WYQ4 148 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 NARS2Q96I59 477 aaKnown RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 HARBI1Q96MB7 349 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 SSBP3Q9BWW4 388 aaPredicted RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 COMMD5Q9GZQ3 224 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 WDR61Q9GZS3 305 aaKnown RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 PARP12Q9H0J9 701 aaKnown RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 MAGT1Q9H0U3 335 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 PATZ1Q9HBE1 687 aaKnown RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 HEYLQ9NQ87 328 aaPredicted RBP6.17□□□□□ -1.42
VPS39-204ENST00000561818 MINOS1-NBL1R4GNA1 71 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 DMXL2Q8TDJ6 3036 aa6.17□□□□□ -1.42
VPS39-204ENST00000561818 A0A0G2JRQ6 117 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 TMEM218A2RU14 115 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 H0YJW9 148 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 FOXH1O75593 365 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 CST7O76096 145 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 KBTBD11O94819 623 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 IFNA10P01566 189 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 METTL15P1P0C7V9 234 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 NPY1RP25929 384 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 SNCAP37840 140 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 GNG10P50151 68 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 PAX9P55771 341 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 RPL8P62917 257 aaKnown RBP6.16□□□□□ -1.42
VPS39-204ENST00000561818 RELBQ01201 579 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 ZNF273Q14593 569 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 TMEM249Q2WGJ8 235 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 HLA-DRB5Q30154 266 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 ACOT6Q3I5F7 207 aaPredicted RBP6.16□□□□□ -1.42
VPS39-204ENST00000561818 TMEM41BQ5BJD5 291 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 FAM74A1Q5RGS3 127 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 OR4A47Q6IF82 309 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 BTNL8Q6UX41 500 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 ODF3L1Q8IXM7 274 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 MMD2Q8IY49 270 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 ZNF525Q8N782 197 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 TMEM217Q8N7C4 229 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 HSD17B11Q8NBQ5 300 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 SLC24A4Q8NFF2 622 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 OR10G4Q8NGN3 311 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 UBALD1Q8TB05 177 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 TMEM167AQ8TBQ9 72 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 RNASEH2CQ8TDP1 164 aaKnown RBP6.16□□□□□ -1.42
VPS39-204ENST00000561818 TAF15Q92804 592 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS39-204ENST00000561818 RPEQ96AT9 228 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 CYYR1Q96J86 154 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 P2RX4Q99571 388 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 REG4Q9BYZ8 158 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 SMIM3Q9BZL3 60 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms