RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 POC5Q8NA72 575 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 OR5AP2Q8NGF4 316 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 OR13F1Q8NGS4 319 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 SNAPC3Q92966 411 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 DLX4Q92988 240 aaPredicted RBP12.11□□□□□ -0.47
VPS39-203ENST00000561797 SLC25A46Q96AG3 418 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 RHOVQ96L33 236 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 COMMD3Q9UBI1 195 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 ZMAT5Q9UDW3 170 aaKnown RBP12.11□□□□□ -0.47
VPS39-203ENST00000561797 SCOCQ9UIL1 159 aa12.11□□□□□ -0.47
VPS39-203ENST00000561797 TNFSF12O43508 249 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 PPYP01298 95 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 HSPB1P04792 205 aaKnown RBP12.1□□□□□ -0.47
VPS39-203ENST00000561797 ECI1P42126 302 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 DEFA5Q01523 94 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 EIF4EBP1Q13541 118 aaPredicted RBP12.1□□□□□ -0.47
VPS39-203ENST00000561797 CDK10Q15131 360 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 OVCH2Q7RTZ1 564 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 VKORC1L1Q8N0U8 176 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 SLC5A7Q9GZV3 580 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 ZNF430Q9H8G1 570 aaPredicted RBP12.1□□□□□ -0.47
VPS39-203ENST00000561797 COA4Q9NYJ1 87 aa12.1□□□□□ -0.47
VPS39-203ENST00000561797 C13orf42A0A1B0GVH6 325 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 MPPED1O15442 326 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 RAMP3O60896 148 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 ACTL6BO94805 426 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 EIF4EP06730 217 aaKnown RBP12.09□□□□□ -0.47
VPS39-203ENST00000561797 SMIM18P0DKX4 95 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 ZNF66Q6ZN08 573 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 OR4S2Q8NH73 311 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 SRSF12Q8WXF0 261 aaKnown RBP12.09□□□□□ -0.47
VPS39-203ENST00000561797 KCTD12Q96CX2 325 aaKnown RBP12.09□□□□□ -0.47
VPS39-203ENST00000561797 TMEM68Q96MH6 324 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 PRR25Q96S07 402 aa12.09□□□□□ -0.47
VPS39-203ENST00000561797 NAA50Q9GZZ1 169 aaKnown RBP12.09□□□□□ -0.47
VPS39-203ENST00000561797 ANKRD34BA5PLL1 514 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 H3BUA1 57 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 PRSS3P35030 304 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 BRWD1-AS2P59051 145 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 C10orf55Q5SWW7 151 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 TMEM17Q86X19 198 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 MMD2Q8IY49 270 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 GIMAP1Q8WWP7 306 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 EHFQ9NZC4 300 aa12.08□□□□□ -0.48
VPS39-203ENST00000561797 A0A0G2JLM5 398 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 CREBL2O60519 120 aaPredicted RBP12.07□□□□□ -0.48
VPS39-203ENST00000561797 SAP30O75446 220 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 PMP2P02689 132 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 OR9G9P0C7N8 305 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 RFX2P48378 723 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 HERV-K104P61576 105 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 SSX9Q7RTT3 188 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 TINAGL1Q9GZM7 467 aaPredicted RBP12.07□□□□□ -0.48
VPS39-203ENST00000561797 SORL1Q92673 2214 aa12.07□□□□□ -0.48
VPS39-203ENST00000561797 SMIM31A0A1B0GVY4 71 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 SULT1C2O00338 296 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 HPGDSO60760 199 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 KBTBD11O94819 623 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 OR2A4O95047 310 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 LY86O95711 162 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 KIR2DS2P43631 304 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 RORCP51449 518 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 INSL3P51460 131 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 MSMO1Q15800 293 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 GPR107Q5VW38 600 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 ZNF818PQ6ZRF7 136 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 ANKRD13BQ86YJ7 626 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 SPAG16Q8N0X2 631 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 ZBTB34Q8NCN2 500 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 ADAD2Q8NCV1 583 aaKnown RBP12.06□□□□□ -0.48
VPS39-203ENST00000561797 OR5H2Q8NGV7 314 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 OR2A7Q96R45 310 aa12.06□□□□□ -0.48
VPS39-203ENST00000561797 ZNF2Q9BSG1 426 aaPredicted RBP12.06□□□□□ -0.48
VPS39-203ENST00000561797 HMX3A6NHT5 357 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 HRASP01112 189 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 APOA1P02647 267 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 PRH1P02810 166 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 ELK1P19419 428 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 CATR1Q13166 79 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 DYRK1AQ13627 763 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 CTF1Q16619 201 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 ZNF429Q86V71 674 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 SNX29P2Q8IUI4 249 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 PUSL1Q8N0Z8 303 aaKnown RBP12.05□□□□□ -0.48
VPS39-203ENST00000561797 OR51H1Q8NH63 302 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 VSTM2AQ8TAG5 236 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 TMEM167AQ8TBQ9 72 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 CMTM3Q96MX0 182 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 SPIN2AQ99865 258 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 SPIN2BQ9BPZ2 258 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 RANGRFQ9HD47 186 aaPredicted RBP12.05□□□□□ -0.48
VPS39-203ENST00000561797 ANAPC10Q9UM13 185 aa12.05□□□□□ -0.48
VPS39-203ENST00000561797 ZNF256Q9Y2P7 627 aaPredicted RBP12.05□□□□□ -0.48
VPS39-203ENST00000561797 DNAH3Q8TD57 4116 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 FAM25AB3EWG3 89 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 FAM25CB3EWG5 89 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 FAM25GB3EWG6 89 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 RBMXL2O75526 392 aaKnown RBP12.04□□□□□ -0.48
VPS39-203ENST00000561797 GABARAPO95166 117 aa12.04□□□□□ -0.48
VPS39-203ENST00000561797 NAT1P18440 290 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms