RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 OR5P3Q8WZ94 311 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 PIGCQ92535 297 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 FRZBQ92765 325 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 APOBEC3DQ96AK3 386 aaPredicted RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 PINX1Q96BK5 328 aaKnown RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 GPR146Q96CH1 333 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 C14orf144Q96I85 54 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 FAM210BQ96KR6 192 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 POM121L2Q96KW2 1035 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 DUX3Q96PT4 197 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 PFDN5Q99471 154 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 HIST1H2BLQ99880 126 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 SSX3Q99909 188 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 DIDO1Q9BTC0 2240 aaKnown RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 RSG1Q9BU20 258 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 TMEM147Q9BVK8 224 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 MRPL37Q9BZE1 423 aaKnown RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 ACTR3CQ9C0K3 210 aaPredicted RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 MAP1LC3BQ9GZQ8 125 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 WDR61Q9GZS3 305 aaKnown RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 MAGT1Q9H0U3 335 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 SRD5A3Q9H8P0 318 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 CHODLQ9H9P2 273 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 TMEM9BQ9NQ34 198 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 MANBALQ9NQG1 85 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 CCL28Q9NRJ3 127 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 RPRMQ9NS64 109 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 DEPPQ9NTK1 212 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 OCIAD1Q9NX40 245 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 MTCH1Q9NZJ7 389 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 GNG13Q9P2W3 67 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 HSPB7Q9UBY9 170 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 CACNG5Q9UF02 275 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 NAT8Q9UHE5 227 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 VAX2Q9UIW0 290 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 PITPNC1Q9UKF7 332 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 BOKQ9UMX3 212 aaPredicted RBP2.04□□□□□ -2.08
SPG11-223ENST00000560858 OR2W1Q9Y3N9 320 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 MPC1Q9Y5U8 109 aa2.04□□□□□ -2.08
SPG11-223ENST00000560858 TECTAO75443 2155 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 A0A0C4DFX4 3053 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 UBE2L5PA0A1B0GUS4 154 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 A0A1W2PR80 420 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SMCO3A2RU48 225 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 PINLYPA6NC86 204 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ZFP92A6NM28 416 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 CD300LBA8K4G0 201 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 RNF212BA8MTL3 300 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 CEBPZOSA8MTT3 80 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 TSTD3H0UI37 97 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 H3BP45 60 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SLC33A1O00400 549 aaPredicted RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 PRYO14603 147 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 MLNRO43193 412 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SYNGR1O43759 233 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SOX15O60248 233 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 VENTXO95231 258 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 HLA-HP01893 362 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SERPINA7P05543 415 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SERPINE2P07093 398 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 METTL15P1P0C7V9 234 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 PATE4P0C8F1 98 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 PGA5P0DJD9 388 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 IAPPP10997 89 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 CD99P14209 185 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 FGF7P21781 194 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 GDF1P27539 372 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 DDTP30046 118 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 IL2RGP31785 369 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ARR3P36575 388 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 SRP14P37108 136 aaKnown RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 WNT5AP41221 380 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 CXCL12P48061 93 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 LHX2P50458 406 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 GPM6AP51674 278 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 FAM3BP58499 235 aaPredicted RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 RAB4BP61018 213 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 RAB11AP62491 216 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 RPL23P62829 140 aaKnown RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 GNG3P63215 75 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 LCN2P80188 198 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ARF1P84077 181 aaKnown RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 DEFA6Q01524 100 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 MEF2BQ02080 365 aaPredicted RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 PAX5Q02548 391 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 TNFRSF9Q07011 255 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ZNF146Q15072 292 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 GABRA6Q16445 453 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ATP6V1FQ16864 119 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 BSXQ3C1V8 233 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ACOT6Q3I5F7 207 aaPredicted RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 SPIN3Q5JUX0 258 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ACTL10Q5JWF8 245 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ASPHD1Q5U4P2 390 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 NCR3LG1Q68D85 454 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 OR2T2Q6IF00 324 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 ACSM6Q6P461 480 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 NUFIP2Q7Z417 695 aaKnown RBP2.03□□□□□ -2.08
SPG11-223ENST00000560858 TMEM144Q7Z5S9 345 aa2.03□□□□□ -2.08
SPG11-223ENST00000560858 C5orf24Q7Z6I8 188 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms