RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RAG2P55895 527 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 LINC00205P59089 165 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 UBE2KP61086 200 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 IFITM3Q01628 133 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 PSG5Q15238 335 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 C5orf64Q2M2E5 130 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 TRIM16LQ309B1 348 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 ARSJQ5FYB0 599 aaPredicted RBP7.37□□□□□ -1.23
LDLR-210ENST00000559340 OR2B11Q5JQS5 317 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 LIN54Q6MZP7 749 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 CCBE1Q6UXH8 406 aaPredicted RBP7.37□□□□□ -1.23
LDLR-210ENST00000559340 ZNF695Q8IW36 515 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 DMBX1Q8NFW5 382 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 OR4A5Q8NH83 315 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 GALNT14Q96FL9 552 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 TMEM222Q9H0R3 208 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 C20orf85Q9H1P6 137 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 METTL1Q9UBP6 276 aaKnown RBP7.37□□□□□ -1.23
LDLR-210ENST00000559340 COL6A5A8TX70 2615 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 TET2Q6N021 2002 aaPredicted RBP7.36□□□□□ -1.23
LDLR-210ENST00000559340 A0A1B0GUS0 222 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 ARPC1BO15143 372 aaKnown RBP7.36□□□□□ -1.23
LDLR-210ENST00000559340 SLC25A17O43808 307 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 PRAF2O60831 178 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 PEX14O75381 377 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 SNAPC5O75971 98 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 OR2A4O95047 310 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 NDUFA7O95182 113 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 SFT2D2O95562 160 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 DHFRP00374 187 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 IGKV1-16P04430 117 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 OR5AC1P0C628 307 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 VAMP1P23763 118 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 UCP1P25874 307 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 MAS1LP35410 378 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 F2RL1P55085 397 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 POU2AF1Q16633 256 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 C4orf46Q504U0 113 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 C9orf152Q5JTZ5 239 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 H2BFWTQ7Z2G1 175 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 FAM219AQ8IW50 185 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 MMD2Q8IY49 270 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 LGI3Q8N145 548 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 C5orf56Q8N8D9 126 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 Q8N9W7 124 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 ADAD2Q8NCV1 583 aaKnown RBP7.36□□□□□ -1.23
LDLR-210ENST00000559340 OR4F5Q8NH21 305 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 OR2T6Q8NHC8 308 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 COQ8AQ8NI60 647 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 RNASE11Q8TAA1 199 aaKnown RBP7.36□□□□□ -1.23
LDLR-210ENST00000559340 TMEM158Q8WZ71 300 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 IL22RA2Q969J5 263 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 R3HDM4Q96D70 268 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 RRNAD1Q96FB5 475 aaKnown RBP7.36□□□□□ -1.23
LDLR-210ENST00000559340 RHOVQ96L33 236 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 OR2A7Q96R45 310 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 GPHA2Q96T91 129 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 GPN1Q9HCN4 374 aaPredicted RBP7.36□□□□□ -1.23
LDLR-210ENST00000559340 PLSCR3Q9NRY6 295 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 FKBP11Q9NYL4 201 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 BET1LQ9NYM9 111 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 CACFD1Q9UGQ2 172 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 ATRQ13535 2644 aa7.36□□□□□ -1.23
LDLR-210ENST00000559340 TRAV6A0A075B6T7 132 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 DUXBA0A1W2PPF3 345 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 INMT-MINDY4F8WBC2 141 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 RAMP3O60896 148 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 TSPAN9O75954 239 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 S1PR2O95136 353 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 CNIH1O95406 144 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 CDS2O95674 445 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 HLA-DRB1P01911 266 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 OR4E1P0C645 316 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 AKR1C2P52895 323 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 TMEM267Q0VDI3 215 aaPredicted RBP7.35□□□□□ -1.23
LDLR-210ENST00000559340 FOXL1Q12952 345 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 TMEM187Q14656 261 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 RGS21Q2M5E4 152 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 SP6Q3SY56 376 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 ZNF585BQ52M93 769 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 NRARPQ7Z6K4 114 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 LYG2Q86SG7 212 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 PPP1R27Q86WC6 154 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 FOXRED2Q8IWF2 684 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 MINDY2Q8NBR6 621 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 GLYATL2Q8WU03 294 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 RBPMSQ93062 196 aaKnown RBP7.35□□□□□ -1.23
LDLR-210ENST00000559340 TMEM230Q96A57 120 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 TP53RKQ96S44 253 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 GON7Q9BXV9 100 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 FBXL15Q9H469 300 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 BEX1Q9HBH7 125 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 NUDT15Q9NV35 164 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 FLVCR2Q9UPI3 526 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 SIGLEC9Q9Y336 463 aa7.35□□□□□ -1.23
LDLR-210ENST00000559340 STAB1Q9NY15 2570 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 A0A0B4J2A0 478 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 C9orf170A2RU37 121 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 MARCH11A6NNE9 402 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 SRRM4A7MD48 611 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms