RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 OR1L1Q8NH94 360 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 LRRC29Q8WV35 223 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 VCX2Q9H322 139 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 PXMP4Q9Y6I8 212 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 C1QTNF9BB2RNN3 333 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 SPRY3O43610 288 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 S1PR2O95136 353 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 MT-CO3P00414 261 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 HBZP02008 142 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 TMEM95Q3KNT9 176 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 C10orf128Q5T292 105 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 CDPF1Q6NVV7 123 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 MISP3Q96FF7 219 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 OR2V2Q96R30 315 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 WBP1LQ9NX94 342 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 DLL3Q9NYJ7 618 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 COL4A3Q01955 1670 aa6.07□□□□□ -1.44
USP3-210ENST00000559192 A0A1B0GW15 77 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 A1L4Q6 167 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 E9PLN8 166 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 J3QT63 122 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 EFNA2O43921 213 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 CYC1P08574 325 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 FGF5P12034 268 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 CCL1P22362 96 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 HGFACQ04756 655 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 LINC00596Q86U02 117 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 DOLPP1Q86YN1 238 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 C11orf68Q9H3H3 251 aaKnown RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 SEBOXQ9HB31 216 aaPredicted RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 BEX4Q9NWD9 120 aaPredicted RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 M0R296 226 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 ZNF324O75467 553 aaPredicted RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 AMBPP02760 352 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 LGALS4P56470 323 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 RPL23P62829 140 aaKnown RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 IL11RAQ14626 422 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 LRRC75BQ2VPJ9 315 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 ZNF645Q8N7E2 425 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 OR10X1Q8NGY0 326 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 CLEC1BQ9P126 229 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 IGKV1-27A0A075B6S5 117 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 IGHV3OR15-7A0A075B7D8 119 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 MDP1Q86V88 176 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 PDPNQ86YL7 162 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 SLC25A45Q8N413 288 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 RNF166Q96A37 237 aaPredicted RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 RPEQ96AT9 228 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 MIEN1Q9BRT3 115 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 CLEC5AQ9NY25 188 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 LAMTOR2Q9Y2Q5 125 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 DPRXA6NFQ7 191 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 C19orf67A6NJJ6 358 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 C3orf80F5H4A9 247 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 ATP5G3P48201 142 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 RPL30P62888 115 aaKnown RBP6.06□□□□□ -1.44
USP3-210ENST00000559192 VKORC1L1Q8N0U8 176 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 ZNF525Q8N782 197 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 CYYR1Q96J86 154 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 TMEM56Q96MV1 263 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 TMEM56-RWDD3S4R434 201 aa6.06□□□□□ -1.44
USP3-210ENST00000559192 hCG_38984A0A1B0GV85 526 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 RBP4P02753 201 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 TYMSP04818 313 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 RNASE1P07998 156 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 CSRP1P21291 193 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 OPRK1P41145 380 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 CLDN18P56856 261 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 PIMREGQ9BSJ6 248 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 WNT10AQ9GZT5 417 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 MRPL16Q9NX20 251 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 KLF2Q9Y5W3 355 aaPredicted RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 CACNA1IQ9P0X4 2223 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 ALPK2Q86TB3 2170 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 TRAV8-2A0A0B4J237 113 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 H3BUT2 72 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 CFPP27918 469 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 TMEM171Q8WVE6 324 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 FLYWCH2Q96CP2 140 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 TMEM70Q9BUB7 260 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 NCOR1P1Q9H4R4 102 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 PLSCR4Q9NRQ2 329 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 IGKV1-12A0A0C4DH73 117 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 DLEU1O43261 78 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 IGKV1D-12P01611 117 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 HLA-DQA1P01909 254 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 CD55P08174 381 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 MNX1P50219 401 aaPredicted RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 RNPS1Q15287 305 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 KCNMB1Q16558 191 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 DRAM1Q8N682 238 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 PNRC2Q9NPJ4 139 aaKnown RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 ELOVL5Q9NYP7 299 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 KLF13Q9Y2Y9 288 aaPredicted RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 CHCHD2Q9Y6H1 151 aaPredicted RBP6.05□□□□□ -1.44
USP3-210ENST00000559192 F5P12259 2224 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 PGPEP1LA6NFU8 196 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 UCP1P25874 307 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 ADMP35318 185 aa6.05□□□□□ -1.44
USP3-210ENST00000559192 JOSD1Q15040 202 aaPredicted RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms